Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP02_RS07220 Genome accession   NZ_CP122948
Coordinates   1509454..1509717 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS21     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1504454..1514717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP02_RS07205 (QAP02_07205) - 1505428..1506768 (-) 1341 WP_286463800.1 COG3014 family protein -
  QAP02_RS07215 (QAP02_07215) comB4 1507089..1509452 (-) 2364 WP_286463803.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP02_RS07220 (QAP02_07220) comB3 1509454..1509717 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  QAP02_RS07225 (QAP02_07225) comB2 1509717..1509998 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  QAP02_RS07230 (QAP02_07230) - 1510144..1510971 (-) 828 WP_286463805.1 DUF5718 family protein -
  QAP02_RS07235 (QAP02_07235) - 1511060..1512112 (-) 1053 WP_286463806.1 MnmA/TRMU family protein -
  QAP02_RS07240 (QAP02_07240) dnaG 1512109..1513788 (-) 1680 WP_286463808.1 DNA primase -
  QAP02_RS07245 (QAP02_07245) groES 1514074..1514430 (+) 357 WP_015643481.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=817328 QAP02_RS07220 WP_000584956.1 1509454..1509717(-) (comB3) [Helicobacter pylori strain BS21]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817328 QAP02_RS07220 WP_000584956.1 1509454..1509717(-) (comB3) [Helicobacter pylori strain BS21]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCAGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACC
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1