Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAD57_RS05525 Genome accession   NZ_CP122947
Coordinates   1173981..1174262 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain BS07     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168981..1179262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD57_RS05505 (QAD57_05500) groES 1169562..1169918 (-) 357 WP_000671949.1 co-chaperone GroES -
  QAD57_RS05510 (QAD57_05505) dnaG 1170192..1171871 (+) 1680 WP_286445473.1 DNA primase -
  QAD57_RS05515 (QAD57_05510) - 1171868..1172920 (+) 1053 WP_286445474.1 MnmA/TRMU family protein -
  QAD57_RS05520 (QAD57_05515) - 1173009..1173836 (+) 828 WP_286445476.1 DUF5718 family protein -
  QAD57_RS05525 (QAD57_05520) comB2 1173981..1174262 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAD57_RS05530 (QAD57_05525) comB3 1174262..1174525 (+) 264 WP_000584942.1 hypothetical protein Machinery gene
  QAD57_RS05535 (QAD57_05530) comB4 1174527..1176890 (+) 2364 WP_286445477.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD57_RS05545 (QAD57_05540) - 1177120..1178550 (+) 1431 WP_286445478.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=817299 QAD57_RS05525 WP_001272686.1 1173981..1174262(+) (comB2) [Helicobacter pylori strain BS07]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817299 QAD57_RS05525 WP_001272686.1 1173981..1174262(+) (comB2) [Helicobacter pylori strain BS07]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989