Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP07_RS05570 Genome accession   NZ_CP122946
Coordinates   1181174..1181458 (+) Length   94 a.a.
NCBI ID   WP_048945574.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS31     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1176174..1186458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP07_RS05545 (QAP07_05545) ftsA 1176348..1177829 (+) 1482 WP_286444054.1 cell division protein FtsA -
  QAP07_RS05550 (QAP07_05550) ftsZ 1177958..1179115 (+) 1158 WP_000233604.1 cell division protein FtsZ -
  QAP07_RS05555 (QAP07_05555) - 1179550..1179739 (-) 190 Protein_1086 hypothetical protein -
  QAP07_RS05560 (QAP07_05560) - 1179806..1180594 (+) 789 WP_286444057.1 integrase -
  QAP07_RS05565 (QAP07_05565) - 1180698..1181177 (+) 480 WP_000571125.1 hypothetical protein -
  QAP07_RS05570 (QAP07_05570) comB2 1181174..1181458 (+) 285 WP_048945574.1 TrbC/VirB2 family protein Machinery gene
  QAP07_RS05575 (QAP07_05575) comB3 1181469..1181732 (+) 264 WP_001177712.1 hypothetical protein Machinery gene
  QAP07_RS05580 (QAP07_05580) - 1181743..1181979 (+) 237 WP_001183709.1 hypothetical protein -
  QAP07_RS05585 (QAP07_05585) - 1181979..1184512 (+) 2534 Protein_1092 VirB4 family type IV secretion/conjugal transfer ATPase -
  QAP07_RS05590 (QAP07_05590) - 1184525..1185784 (-) 1260 WP_286443611.1 RNA-guided endonuclease TnpB family protein -
  QAP07_RS05595 (QAP07_05595) - 1185759..1186412 (-) 654 WP_286444025.1 IS607-like element IS607 family transposase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10713.02 Da        Isoelectric Point: 10.9123

>NTDB_id=817280 QAP07_RS05570 WP_048945574.1 1181174..1181458(+) (comB2) [Helicobacter pylori strain BS31]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGTAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=817280 QAP07_RS05570 WP_048945574.1 1181174..1181458(+) (comB2) [Helicobacter pylori strain BS31]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCACTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553