Detailed information NTG0817182

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R3J27_RS07230
• Genome accession: NZ_CP136979
• Coordinates: 1545229..1546518 (-)
• Length: 429 a.a.
• NCBI ID: WP_225621832.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8418
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1540229..1551518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J27_RS07210 (R3J27_07185)	-	1541106..1541843 (+)	738	WP_004083738.1	pteridine reductase	-
R3J27_RS07215 (R3J27_07190)	folK	1541854..1542369 (-)	516	WP_031345731.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
R3J27_RS07220 (R3J27_07195)	-	1542495..1543991 (-)	1497	WP_004083740.1	ATP-binding protein	-
R3J27_RS07225 (R3J27_07200)	crcB	1544667..1545068 (-)	402	WP_004083741.1	fluoride efflux transporter CrcB	-
R3J27_RS07230 (R3J27_07205)	rarA	1545229..1546518 (-)	1290	WP_225621832.1	replication-associated recombination protein A	Machinery gene
R3J27_RS07235 (R3J27_07210)	lolA	1546742..1547368 (-)	627	WP_049756311.1	outer membrane lipoprotein chaperone LolA	-
R3J27_RS07240 (R3J27_07215)	-	1547931..1549841 (-)	1911	WP_004083744.1	DUF3857 domain-containing transglutaminase family protein	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47824.50 Da
• Isoelectric Point: 6.3540

>NTDB_id=817182 R3J27_RS07230 WP_225621832.1 1545229..1546518(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8418]
MRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHYIDAEFRAVSAVLSGLPEVRQILAEAA
QRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQ
DTERGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADLLSQVLADRSRRFDKRGEQFYDQISAL
HKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLAS
TAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQPVSRG
LEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1290 bp

>NTDB_id=817182 R3J27_RS07230 WP_225621832.1 1545229..1546518(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8418]
ATGCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGC
TTCCGGGAATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATT
ACATTGATGCAGAATTTCGGGCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCG
CAGCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTT
TCTGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGT
TACTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAG
GATACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGG
TGACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACT
TGCTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTG
CACAAGAGTGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTAT
CTACTTGGCCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGG
AGGCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGT
ACAGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCC
GCTACATCTGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTG
AGAACGGTGTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGT
CTGGAGATTAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCC
GCGTGCATAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (247-412)

• AAA C-terminal domain (AAA_assoc_2) (168-245)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (1-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.462	96.97	0.373