Detailed information NTG0817121

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R3J34_RS06680
• Genome accession: NZ_CP136975
• Coordinates: 1397002..1398291 (-)
• Length: 429 a.a.
• NCBI ID: WP_225621832.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8070
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1392002..1403291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J34_RS06660 (R3J34_06630)	-	1392879..1393616 (+)	738	WP_004083738.1	pteridine reductase	-
R3J34_RS06665 (R3J34_06635)	folK	1393627..1394142 (-)	516	WP_031345731.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
R3J34_RS06670 (R3J34_06640)	-	1394268..1395764 (-)	1497	WP_128283905.1	sensor histidine kinase	-
R3J34_RS06675 (R3J34_06645)	crcB	1396440..1396841 (-)	402	WP_004083741.1	fluoride efflux transporter CrcB	-
R3J34_RS06680 (R3J34_06650)	rarA	1397002..1398291 (-)	1290	WP_225621832.1	replication-associated recombination protein A	Machinery gene
R3J34_RS06685 (R3J34_06655)	lolA	1398515..1399141 (-)	627	WP_049756311.1	outer membrane lipoprotein chaperone LolA	-
R3J34_RS06690 (R3J34_06660)	-	1399704..1401614 (-)	1911	WP_004083744.1	DUF3857 domain-containing transglutaminase family protein	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47824.50 Da
• Isoelectric Point: 6.3540

>NTDB_id=817121 R3J34_RS06680 WP_225621832.1 1397002..1398291(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
MRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHYIDAEFRAVSAVLSGLPEVRQILAEAA
QRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQ
DTERGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADLLSQVLADRSRRFDKRGEQFYDQISAL
HKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLAS
TAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQPVSRG
LEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1290 bp

>NTDB_id=817121 R3J34_RS06680 WP_225621832.1 1397002..1398291(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8070]
ATGCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGC
TTCCGGGAATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATT
ACATTGATGCAGAATTTCGGGCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCG
CAGCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTT
TCTGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGT
TACTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAG
GATACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGG
TGACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACT
TGCTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTG
CACAAGAGTGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTAT
CTACTTGGCCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGG
AGGCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGT
ACAGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCC
GCTACATCTGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTG
AGAACGGTGTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGT
CTGGAGATTAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCC
GCGTGCATAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (247-412)

• AAA C-terminal domain (AAA_assoc_2) (168-245)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (1-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.462	96.97	0.373