Detailed information NTG0817002

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R3J36_RS05435
• Genome accession: NZ_CP136973
• Coordinates: 1206766..1208055 (-)
• Length: 429 a.a.
• NCBI ID: WP_225621832.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain CFBP8068
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1201766..1213055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J36_RS05415 (R3J36_05405)	-	1202643..1203380 (+)	738	WP_004083738.1	pteridine reductase	-
R3J36_RS05420 (R3J36_05410)	folK	1203391..1203906 (-)	516	WP_027699988.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
R3J36_RS05425 (R3J36_05415)	-	1204032..1205528 (-)	1497	WP_027699989.1	sensor histidine kinase	-
R3J36_RS05430 (R3J36_05420)	crcB	1206204..1206605 (-)	402	WP_004083741.1	fluoride efflux transporter CrcB	-
R3J36_RS05435 (R3J36_05425)	rarA	1206766..1208055 (-)	1290	WP_225621832.1	replication-associated recombination protein A	Machinery gene
R3J36_RS05440 (R3J36_05430)	lolA	1208272..1208898 (-)	627	WP_051247953.1	outer membrane lipoprotein chaperone LolA	-
R3J36_RS05445 (R3J36_05435)	-	1209461..1211371 (-)	1911	WP_004083744.1	DUF3857 domain-containing transglutaminase family protein	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47824.50 Da
• Isoelectric Point: 6.3540

>NTDB_id=817002 R3J36_RS05435 WP_225621832.1 1206766..1208055(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
MRPRTLHEMVGQKRLLAPDRALHRAVASGNVHSMILWGPPGCGKTTLSLLLAHYIDAEFRAVSAVLSGLPEVRQILAEAA
QRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSALLSRCRVHVLEAVSSQDIVVALQRALQ
DTERGLGGQKIEVSEASLLEIAKAADGDVRRALTLLEIAAELAQDEDEQITADLLSQVLADRSRRFDKRGEQFYDQISAL
HKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGDLAFAQLVLYLAS
TAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENGVALEQTCFPDALGERIYYQPVSRG
LEIKLKEKLDWLRAARAQIQADKPQRPRA

Nucleotide

• Length: 1290 bp

>NTDB_id=817002 R3J36_RS05435 WP_225621832.1 1206766..1208055(-) (rarA) [Xylella fastidiosa subsp. multiplex strain CFBP8068]
ATGCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGCCCCAGATCGTGCATTGCATCGTGCGGTGGC
TTCCGGGAATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATT
ACATTGATGCAGAATTTCGGGCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGAGGCTGCG
CAGCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTT
TCTGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGT
TACTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATCGTTGTGGCATTGCAGCGGGCGTTGCAG
GATACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTGAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGG
TGACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGGATGAGCAGATAACCGCTGACT
TGCTTTCGCAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTG
CACAAGAGTGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTAT
CTACTTGGCCCGGCGCTTGACCCGCATGGCGATTGAGGATATCGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGG
AGGCTTGGGACATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGT
ACAGCAAAATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCC
GCTACATCTGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTG
AGAACGGTGTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTACCAACCGGTATCCCGCGGT
CTGGAGATTAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCGGCC
GCGTGCATAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (247-412)

• AAA C-terminal domain (AAA_assoc_2) (168-245)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (1-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	38.462	96.97	0.373