Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R3H61_RS01990 Genome accession   NZ_CP136951
Coordinates   388481..389263 (+) Length   260 a.a.
NCBI ID   WP_038434236.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo09     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 383481..394263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H61_RS01970 (R3H61_01970) - 383818..384783 (-) 966 WP_002983258.1 asparaginase -
  R3H61_RS01975 (R3H61_01975) - 384855..386243 (+) 1389 WP_002992572.1 Cof-type HAD-IIB family hydrolase -
  R3H61_RS01980 (R3H61_01980) - 386366..386818 (-) 453 WP_002992571.1 universal stress protein -
  R3H61_RS01985 (R3H61_01985) - 387049..388263 (+) 1215 WP_011184883.1 pyridoxal phosphate-dependent aminotransferase -
  R3H61_RS01990 (R3H61_01990) codY 388481..389263 (+) 783 WP_038434236.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R3H61_RS01995 (R3H61_01995) - 389410..389964 (+) 555 WP_002983281.1 cysteine hydrolase family protein -
  R3H61_RS02000 (R3H61_02000) - 390423..390743 (+) 321 Protein_341 putative PEP-binding protein -
  R3H61_RS02005 (R3H61_02005) gatC 390975..391277 (+) 303 WP_002988561.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  R3H61_RS02010 (R3H61_02010) gatA 391277..392743 (+) 1467 WP_003053823.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  R3H61_RS02015 (R3H61_02015) gatB 392743..394182 (+) 1440 WP_003052542.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28647.79 Da        Isoelectric Point: 4.5611

>NTDB_id=816618 R3H61_RS01990 WP_038434236.1 388481..389263(+) (codY) [Streptococcus pyogenes strain Spyo09]
MPNLLEKTRKITSILQRSVDSLETELPYNTMASRLADIIDCNACIINGGGTLLGYAMKYKTNTDRVEEFFEAKQFPDTYV
KAASRVYDTEANLSVENELTIFPIESKDTYPGGLTTIAPIYGGGMRLGSLIIWRNDNEFSDDDLILVEISSTVVGIQLLN
LQTENLEDTIRKQTAVNMAINTLSYSEMKAVAAILGELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFAKLKEF

Nucleotide


Download         Length: 783 bp        

>NTDB_id=816618 R3H61_RS01990 WP_038434236.1 388481..389263(+) (codY) [Streptococcus pyogenes strain Spyo09]
ATGCCTAACTTATTAGAAAAAACTCGTAAAATCACATCTATTTTGCAGCGTTCCGTAGATAGCCTAGAAACAGAATTACC
GTATAACACAATGGCATCTCGCCTAGCAGATATCATTGACTGCAATGCTTGTATTATCAATGGCGGCGGCACATTGCTTG
GTTATGCCATGAAATATAAAACTAACACTGATCGTGTTGAGGAATTTTTTGAAGCTAAACAATTTCCAGATACTTATGTA
AAGGCTGCTAGCCGAGTTTACGATACAGAAGCTAACCTTTCTGTCGAAAATGAATTGACTATATTCCCTATTGAGTCTAA
AGACACTTATCCAGGAGGTCTAACGACTATTGCGCCGATTTATGGTGGAGGGATGCGCCTTGGATCACTCATTATCTGGC
GTAATGACAATGAGTTTAGTGATGATGATTTGATTTTGGTTGAGATCTCAAGTACTGTTGTGGGGATTCAACTATTAAAT
CTTCAGACAGAAAACTTAGAAGACACCATCCGTAAACAAACAGCGGTCAACATGGCAATTAATACGCTTTCTTATTCAGA
AATGAAAGCTGTTGCAGCAATTCTTGGAGAGTTAGATGGTAACGAAGGACGATTGACAGCTTCTGTTATTGCTGATCGTA
TTGGTATTACCCGTTCTGTTATTGTCAATGCTCTGCGTAAATTAGAAAGTGCAGGGATTATTGAAAGTCGTTCTCTTGGT
ATGAAAGGGACATACCTCAAAGTTATCAACGAAGGTATTTTTGCTAAATTAAAAGAATTTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.846

0.654
  codY Bacillus subtilis subsp. subtilis str. 168

50.98

98.077

0.5