Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R3H37_RS08145 Genome accession   NZ_CP136948
Coordinates   1648678..1649946 (+) Length   422 a.a.
NCBI ID   WP_129284190.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Spyo01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643678..1654946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3H37_RS08120 (R3H37_08125) - 1643846..1644595 (-) 750 WP_136114733.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  R3H37_RS08125 (R3H37_08130) prmA 1644595..1645548 (-) 954 WP_330554638.1 50S ribosomal protein L11 methyltransferase -
  R3H37_RS08130 (R3H37_08135) - 1645619..1646089 (-) 471 WP_002987990.1 DUF3013 family protein -
  R3H37_RS08135 (R3H37_08140) pabB 1646289..1648046 (+) 1758 WP_136285331.1 aminodeoxychorismate synthase component I -
  R3H37_RS08140 (R3H37_08145) - 1648079..1648645 (+) 567 WP_021733904.1 aminodeoxychorismate/anthranilate synthase component II -
  R3H37_RS08145 (R3H37_08150) rarA 1648678..1649946 (+) 1269 WP_129284190.1 replication-associated recombination protein A Machinery gene
  R3H37_RS08160 (R3H37_08165) - 1650566..1651756 (-) 1191 WP_002299749.1 IS256-like element ISLgar5 family transposase -
  R3H37_RS08165 (R3H37_08170) - 1651841..1651957 (+) 117 Protein_1551 exotoxin -
  R3H37_RS08170 (R3H37_08175) - 1652283..1652507 (-) 225 WP_136074266.1 hypothetical protein -
  R3H37_RS08175 (R3H37_08180) - 1652686..1654314 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46631.04 Da        Isoelectric Point: 6.3774

>NTDB_id=816478 R3H37_RS08145 WP_129284190.1 1648678..1649946(+) (rarA) [Streptococcus pyogenes strain Spyo01]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTSTNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=816478 R3H37_RS08145 WP_129284190.1 1648678..1649946(+) (rarA) [Streptococcus pyogenes strain Spyo01]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCTC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592