Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RJD36_RS10320 Genome accession   NZ_CP136943
Coordinates   2041559..2042344 (-) Length   261 a.a.
NCBI ID   WP_003066268.1    Uniprot ID   A0A4R5G5Z8
Organism   Streptococcus pasteurianus strain WUSP082     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2036559..2047344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS10295 (RJD36_10295) - 2036610..2037518 (-) 909 WP_117479727.1 DMT family transporter -
  RJD36_RS10300 (RJD36_10300) gatB 2037678..2039120 (-) 1443 WP_003066259.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  RJD36_RS10305 (RJD36_10305) gatA 2039120..2040586 (-) 1467 WP_003066261.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  RJD36_RS10310 (RJD36_10310) gatC 2040586..2040888 (-) 303 WP_003066263.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RJD36_RS10315 (RJD36_10315) - 2041011..2041559 (-) 549 WP_003066265.1 cysteine hydrolase family protein -
  RJD36_RS10320 (RJD36_10320) codY 2041559..2042344 (-) 786 WP_003066268.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RJD36_RS10325 (RJD36_10325) - 2042558..2043772 (-) 1215 WP_003066271.1 pyridoxal phosphate-dependent aminotransferase -
  RJD36_RS10330 (RJD36_10330) - 2043809..2045575 (-) 1767 WP_003066275.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  RJD36_RS10335 (RJD36_10335) - 2045899..2046351 (+) 453 WP_003066277.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28860.04 Da        Isoelectric Point: 4.4574

>NTDB_id=816368 RJD36_RS10320 WP_003066268.1 2041559..2042344(-) (codY) [Streptococcus pasteurianus strain WUSP082]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFDAKQFPESYV
KAASRVYDTEANLSVDNELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFLEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=816368 RJD36_RS10320 WP_003066268.1 2041559..2042344(-) (codY) [Streptococcus pasteurianus strain WUSP082]
ATGCCGAATTTATTAGAAAAAACACGAAAGATTACATCAATTTTGCAACGCTCCGTTGACAGCTTAGACACTGAATTGCC
ATATAATACAATGGCTGCTCAATTAGCTGATATCATTGATTGTAACGCTTGCATCATTAATGGAGGGGGTAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTAGAGGAATTCTTTGATGCCAAACAATTCCCAGAAAGCTATGTT
AAAGCGGCTAGTCGTGTTTACGACACAGAGGCAAATTTGTCTGTGGATAATGAATTGACTATTTTCCCAGTAGAATCAAA
AGACATCTATCCTGATGGCTTGACAACTATTGCACCAATCTATGGTGGCGGTATGCGTCTAGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTTAGAAGATGATTTGATTCTTGTTGAAATTGCCTCAACAGTAGTTGGTATCCAATTACTTAAT
CTTCAAACTGAAAATCTTGAAGAAACCATTCGTAAACAAACAGCTGTTAATATGGCTATTAACACGCTATCTTACTCAGA
AATGAAAGCTGTATCAGCTATTTTGGGTGAATTAGACGGTACAGAAGGTCGCTTAACTGCATCAGTTATTGCTGACCGCA
TTGGTATTACACGTTCAGTTATTGTCAATGCCCTACGTAAATTGGAATCTGCAGGGATTATCGAAAGCCGTTCATTGGGG
ATGAAAGGAACTTACCTTAAAGTCATCAATGAAGGTATCTTCGATAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5G5Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494