Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RJD36_RS05075 Genome accession   NZ_CP136943
Coordinates   969496..971268 (+) Length   590 a.a.
NCBI ID   WP_058692202.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP082     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 964496..976268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD36_RS05050 (RJD36_05050) gdhA 964533..965882 (+) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -
  RJD36_RS05055 (RJD36_05055) - 966159..966668 (+) 510 WP_117479609.1 GNAT family N-acetyltransferase -
  RJD36_RS05060 (RJD36_05060) - 966665..967075 (+) 411 WP_003065257.1 peptide deformylase -
  RJD36_RS05065 (RJD36_05065) rcrR 967248..967688 (+) 441 WP_061100410.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RJD36_RS05070 (RJD36_05070) rcrP 967692..969506 (+) 1815 WP_117479607.1 ABC transporter ATP-binding protein Regulator
  RJD36_RS05075 (RJD36_05075) rcrQ 969496..971268 (+) 1773 WP_058692202.1 ABC transporter ATP-binding protein Regulator
  RJD36_RS05080 (RJD36_05080) - 971535..972512 (+) 978 WP_117479603.1 alcohol dehydrogenase catalytic domain-containing protein -
  RJD36_RS05085 (RJD36_05085) - 972502..972954 (+) 453 WP_003065246.1 MarR family winged helix-turn-helix transcriptional regulator -
  RJD36_RS05090 (RJD36_05090) - 972944..973579 (+) 636 WP_013851963.1 ABC transporter permease -
  RJD36_RS05095 (RJD36_05095) - 973569..974489 (+) 921 WP_013851962.1 glycine betaine ABC transporter substrate-binding protein -
  RJD36_RS05100 (RJD36_05100) - 974517..975275 (+) 759 WP_172473475.1 ABC transporter ATP-binding protein -
  RJD36_RS05105 (RJD36_05105) - 975268..975894 (+) 627 WP_003065238.1 ABC transporter permease -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65338.42 Da        Isoelectric Point: 5.1262

>NTDB_id=816336 RJD36_RS05075 WP_058692202.1 969496..971268(+) (rcrQ) [Streptococcus pasteurianus strain WUSP082]
MENKKKTSFYDRMKPYIRGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=816336 RJD36_RS05075 WP_058692202.1 969496..971268(+) (rcrQ) [Streptococcus pasteurianus strain WUSP082]
ATGGAAAATAAGAAAAAAACATCTTTCTATGACAGAATGAAGCCCTATATTAGAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGATCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTCTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGTCAACAAAATAACTTGGCTGCGATTAATGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGGGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGCCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGATGAGTCTGATAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TGGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGCGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGACGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAGGGTTATGACACT
TATCTTGATGATTCTGTAACACTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGACGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCTATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGCGGATTCTATGCTGACCTCTACAACTCACAATT
TGAAGTAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.311

100

0.736