Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QCM40_RS02210 Genome accession   NZ_CP122516
Coordinates   434134..434415 (+) Length   93 a.a.
NCBI ID   WP_001277275.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP34     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429134..439415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM40_RS02190 (QCM40_02190) groES 429714..430070 (-) 357 WP_033122111.1 co-chaperone GroES -
  QCM40_RS02195 (QCM40_02195) dnaG 430342..432021 (+) 1680 WP_279955786.1 DNA primase -
  QCM40_RS02200 (QCM40_02200) - 432018..433070 (+) 1053 WP_279955789.1 MnmA/TRMU family protein -
  QCM40_RS02205 (QCM40_02205) - 433161..433988 (+) 828 WP_279955791.1 DUF5718 family protein -
  QCM40_RS02210 (QCM40_02210) comB2 434134..434415 (+) 282 WP_001277275.1 TrbC/VirB2 family protein Machinery gene
  QCM40_RS02215 (QCM40_02215) comB3 434415..434678 (+) 264 WP_000584971.1 hypothetical protein Machinery gene
  QCM40_RS02220 (QCM40_02220) comB4 434680..437043 (+) 2364 WP_279955797.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QCM40_RS02230 (QCM40_02230) - 437364..438704 (+) 1341 WP_279955799.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10565.85 Da        Isoelectric Point: 9.0456

>NTDB_id=816255 QCM40_RS02210 WP_001277275.1 434134..434415(+) (comB2) [Helicobacter pylori strain HP34]
MSAYFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=816255 QCM40_RS02210 WP_001277275.1 434134..434415(+) (comB2) [Helicobacter pylori strain HP34]
ATGTCCGCTTATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978