Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R1T12_RS26235 Genome accession   NZ_CP136909
Coordinates   5595007..5595432 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa PA103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5590007..5600432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T12_RS26220 (R1T12_26220) pilX 5590577..5591164 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  R1T12_RS26225 (R1T12_26225) pilY1 5591176..5594661 (+) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -
  R1T12_RS26230 (R1T12_26230) pilY2 5594663..5595010 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  R1T12_RS26235 (R1T12_26235) comF 5595007..5595432 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  R1T12_RS26240 (R1T12_26240) ispH 5595477..5596421 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R1T12_RS26245 (R1T12_26245) fkpB 5596507..5596947 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  R1T12_RS26250 (R1T12_26250) lspA 5596940..5597449 (-) 510 WP_019486629.1 signal peptidase II -
  R1T12_RS26255 (R1T12_26255) ileS 5597442..5600273 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=816255 R1T12_RS26235 WP_003094721.1 5595007..5595432(+) (comF) [Pseudomonas aeruginosa PA103]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=816255 R1T12_RS26235 WP_003094721.1 5595007..5595432(+) (comF) [Pseudomonas aeruginosa PA103]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATTCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383