Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8522_RS08905 Genome accession   NZ_AP026916
Coordinates   1743585..1744856 (+) Length   423 a.a.
NCBI ID   WP_001113211.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738585..1749856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8522_RS08865 (PC0006_18080) - 1738776..1739810 (-) 1035 WP_050122676.1 ATP-binding protein -
  R8522_RS08870 (PC0006_18090) - 1739929..1740078 (-) 150 Protein_1760 7,8-dihydro-8-oxoguanine-triphosphatase -
  R8522_RS08875 (PC0006_18100) - 1740080..1741147 (-) 1068 WP_000719721.1 site-2 protease family protein -
  R8522_RS08880 (PC0006_18110) - 1741166..1741636 (-) 471 WP_000257084.1 DUF3013 family protein -
  R8522_RS08885 (PC0006_18120) - 1741927..1742379 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8522_RS08890 (PC0006_18130) - 1742416..1742595 (-) 180 WP_025169096.1 type II toxin-antitoxin system HicA family toxin -
  R8522_RS08895 (PC0006_18140) - 1742732..1742911 (-) 180 WP_001809903.1 hypothetical protein -
  R8522_RS08900 (PC0006_18150) - 1743076..1743315 (-) 240 WP_000818078.1 hypothetical protein -
  R8522_RS08905 (PC0006_18160) rarA 1743585..1744856 (+) 1272 WP_001113211.1 replication-associated recombination protein A Machinery gene
  R8522_RS08915 (PC0006_18170) - 1745400..1746719 (-) 1320 WP_050122679.1 glycoside hydrolase family 32 protein -
  R8522_RS08920 (PC0006_18180) - 1746729..1748345 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  R8522_RS08925 (PC0006_18190) - 1748374..1749264 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46997.44 Da        Isoelectric Point: 5.9471

>NTDB_id=81624 R8522_RS08905 WP_001113211.1 1743585..1744856(+) (rarA) [Streptococcus pneumoniae strain PZ900700006]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=81624 R8522_RS08905 WP_001113211.1 1743585..1744856(+) (rarA) [Streptococcus pneumoniae strain PZ900700006]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTTT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572