Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QCM05_RS02260 Genome accession   NZ_CP122515
Coordinates   466442..466723 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain HP22     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461442..471723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCM05_RS02240 (QCM05_02240) - 462153..463493 (-) 1341 WP_279963552.1 hypothetical protein -
  QCM05_RS02250 (QCM05_02250) comB4 463814..466177 (-) 2364 WP_279963288.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QCM05_RS02255 (QCM05_02255) comB3 466179..466442 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  QCM05_RS02260 (QCM05_02260) comB2 466442..466723 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QCM05_RS02265 (QCM05_02265) - 466868..467695 (-) 828 WP_279963293.1 DUF5718 family protein -
  QCM05_RS02270 (QCM05_02270) - 467786..468838 (-) 1053 WP_279963295.1 MnmA/TRMU family protein -
  QCM05_RS02275 (QCM05_02275) dnaG 468835..470514 (-) 1680 WP_279963297.1 DNA primase -
  QCM05_RS02280 (QCM05_02280) groES 470789..471145 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=816239 QCM05_RS02260 WP_001272686.1 466442..466723(-) (comB2) [Helicobacter pylori strain HP22]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=816239 QCM05_RS02260 WP_001272686.1 466442..466723(-) (comB2) [Helicobacter pylori strain HP22]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCAAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989