Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R8522_RS07990 Genome accession   NZ_AP026916
Coordinates   1563911..1564699 (-) Length   262 a.a.
NCBI ID   WP_000940733.1    Uniprot ID   C1CSK2
Organism   Streptococcus pneumoniae strain PZ900700006     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1558911..1569699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8522_RS07960 (PC0006_16250) - 1559531..1560484 (+) 954 WP_317634523.1 IS30-like element ISSpn8 family transposase -
  R8522_RS07965 - 1560506..1561255 (-) 750 Protein_1580 class I SAM-dependent methyltransferase -
  R8522_RS07970 (PC0006_16260) - 1561463..1561633 (+) 171 WP_000403101.1 hypothetical protein -
  R8522_RS07975 (PC0006_16270) - 1561755..1562885 (-) 1131 WP_000229961.1 ABC transporter ATP-binding protein -
  R8522_RS07985 (PC0006_16280) - 1563336..1563911 (-) 576 WP_000158722.1 cysteine hydrolase family protein -
  R8522_RS07990 (PC0006_16290) codY 1563911..1564699 (-) 789 WP_000940733.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R8522_RS07995 (PC0006_16300) - 1564963..1566537 (-) 1575 WP_000671113.1 DEAD/DEAH box helicase -
  R8522_RS08000 (PC0006_16310) - 1566736..1567962 (-) 1227 WP_000841577.1 OFA family MFS transporter -
  R8522_RS08005 (PC0006_16320) - 1568156..1569472 (+) 1317 WP_050123754.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29756.15 Da        Isoelectric Point: 5.7806

>NTDB_id=81616 R8522_RS07990 WP_000940733.1 1563911..1564699(-) (codY) [Streptococcus pneumoniae strain PZ900700006]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=81616 R8522_RS07990 WP_000940733.1 1563911..1564699(-) (codY) [Streptococcus pneumoniae strain PZ900700006]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CSK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454

Multiple sequence alignment