Detailed information NTG0816138

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R1T29_RS05625
• Genome accession: NZ_CP136903
• Coordinates: 1206340..1207629 (+)
• Length: 429 a.a.
• NCBI ID: WP_021447448.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain X1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1201340..1212629

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R1T29_RS05610 (R1T29_05610)	lrp	1201839..1202333 (+)	495	WP_005378234.1	leucine-responsive transcriptional regulator Lrp	-
R1T29_RS05615 (R1T29_05615)	-	1202486..1205572 (+)	3087	WP_203502849.1	DNA translocase FtsK	-
R1T29_RS05620 (R1T29_05620)	lolA	1205647..1206273 (+)	627	WP_005460060.1	outer membrane lipoprotein chaperone LolA	-
R1T29_RS05625 (R1T29_05625)	rarA	1206340..1207629 (+)	1290	WP_021447448.1	replication-associated recombination protein A	Machinery gene
R1T29_RS05630 (R1T29_05630)	serS	1207721..1209028 (+)	1308	WP_005495761.1	serine--tRNA ligase	-
R1T29_RS05635 (R1T29_05635)	-	1209398..1209964 (+)	567	WP_021453009.1	hypothetical protein	-
R1T29_RS05640 (R1T29_05640)	-	1209958..1210398 (+)	441	WP_203502841.1	hypothetical protein	-
R1T29_RS05645 (R1T29_05645)	-	1210533..1210799 (+)	267	WP_021449297.1	DksA/TraR family C4-type zinc finger protein	-
R1T29_RS05650 (R1T29_05650)	bioA	1210869..1212149 (-)	1281	WP_025533885.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-

Sequence

Protein

• Length: 429 a.a.
• Molecular weight: 47564.76 Da
• Isoelectric Point: 5.8532

>NTDB_id=816138 R1T29_RS05625 WP_021447448.1 1206340..1207629(+) (rarA) [Vibrio parahaemolyticus strain X1]
MRPQTIEQYIGQQHILGPGKPLRRALEAGHVHSMILWGPPGTGKTTLAEVAANYANAEVERVSAVTSGVKEIRAAIEKAR
ENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARVYKLTSLDKEEISLALNQAIN
DKERGLGDTPANFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAEVAGEKVSRFDNKGDIWYDLI
SAVHKSIRGSNPDAALYWAARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWDCFTRVGPAEGERAIAQAIVY
LACAPKSNAVYVAWKQALTDAHNLPEYEVPHHLRNAPTSLMKDMGYGAEYRYAHDEPGAYAAGEQYLPPEMADRKYYQPT
NRGLETKIGEKLDYLAKLDANSQQKRYEK

Nucleotide

• Length: 1290 bp

>NTDB_id=816138 R1T29_RS05625 WP_021447448.1 1206340..1207629(+) (rarA) [Vibrio parahaemolyticus strain X1]
ATGAGACCGCAAACTATTGAGCAGTACATCGGTCAGCAACACATTCTTGGCCCGGGTAAACCCCTGCGTCGCGCGTTAGA
GGCTGGCCATGTCCACTCAATGATCCTTTGGGGGCCTCCTGGTACAGGTAAAACCACGTTAGCGGAAGTCGCTGCTAATT
ACGCCAATGCGGAAGTTGAACGTGTGTCTGCGGTGACGTCCGGTGTGAAAGAGATTCGTGCTGCAATCGAAAAAGCGCGC
GAGAACAAAATGGCGGGTCGCCGCACCATCTTGTTTGTGGATGAGGTCCATCGCTTCAACAAATCGCAACAAGATGCGTT
CTTACCACATATTGAAGATGGAACCGTAACGTTTATTGGCGCAACGACAGAGAACCCGTCTTTCGAACTGAACAACGCAT
TGTTGTCTCGTGCTCGAGTCTACAAGCTGACTTCACTGGATAAAGAAGAGATCTCACTCGCACTAAATCAAGCGATTAAC
GACAAAGAACGAGGCCTGGGCGATACGCCAGCGAACTTTGCTGATAATGTGTTAGACCGTCTAGCCGAGTTGGTGAACGG
CGATGCTCGCATGTCGCTTAACTACCTTGAACTTCTCTACGATATGGCAGAGGACAATGCGCAGGGTGAAAAAGAGATAA
CACTCAAACTGCTTGCTGAAGTAGCCGGGGAGAAAGTCTCTCGCTTCGATAATAAAGGCGACATTTGGTACGATTTGATC
TCCGCTGTGCACAAATCTATTCGTGGATCAAACCCAGATGCCGCTTTGTATTGGGCTGCTCGTATGATAGCTGCAGGTTG
TGATCCACTTTACATTGCCCGTCGATTACTTGCGATAGCATCGGAAGATGTCGGCAATGCGGACCCTAGAGCCATGCAAG
TTGCACTCTCCGCGTGGGACTGTTTTACACGCGTTGGTCCAGCAGAGGGTGAGCGTGCGATTGCTCAAGCAATTGTTTAT
CTCGCGTGCGCTCCAAAGAGTAATGCCGTTTATGTTGCTTGGAAACAAGCGCTCACTGACGCACATAACTTGCCTGAATA
TGAAGTGCCGCATCACTTGCGTAATGCACCCACCAGTCTGATGAAAGACATGGGCTATGGCGCAGAATATCGATATGCTC
ACGACGAGCCGGGTGCTTATGCAGCGGGTGAGCAATATTTGCCACCAGAAATGGCGGATCGTAAGTACTATCAGCCGACA
AATCGCGGTCTAGAAACCAAAATCGGCGAAAAGTTAGATTACTTGGCTAAATTAGACGCAAATAGCCAACAAAAGCGCTA
TGAAAAGTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (34-139)

• MgsA AAA+ ATPase C terminal (MgsA_C) (249-415)

• AAA C-terminal domain (AAA_assoc_2) (170-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.474	97.436	0.385