Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R1Y14_RS09840 Genome accession   NZ_CP136899
Coordinates   1913664..1914935 (+) Length   423 a.a.
NCBI ID   WP_001113212.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908664..1919935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS09805 (R1Y14_09805) - 1909725..1910153 (-) 429 WP_000418174.1 NUDIX hydrolase -
  R1Y14_RS09810 (R1Y14_09810) - 1910134..1911222 (-) 1089 WP_000719713.1 site-2 protease family protein -
  R1Y14_RS09815 (R1Y14_09815) - 1911241..1911711 (-) 471 WP_000257086.1 DUF3013 family protein -
  R1Y14_RS09820 (R1Y14_09820) - 1912002..1912454 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R1Y14_RS09825 (R1Y14_09825) - 1912491..1912670 (-) 180 WP_001132284.1 type II toxin-antitoxin system HicA family toxin -
  R1Y14_RS09830 (R1Y14_09830) - 1912807..1912986 (-) 180 WP_001048906.1 hypothetical protein -
  R1Y14_RS09835 (R1Y14_09835) - 1913151..1913372 (-) 222 WP_000425689.1 hypothetical protein -
  R1Y14_RS09840 (R1Y14_09840) rarA 1913664..1914935 (+) 1272 WP_001113212.1 replication-associated recombination protein A Machinery gene
  R1Y14_RS09850 (R1Y14_09850) - 1915480..1916799 (-) 1320 WP_054366031.1 glycoside hydrolase family 32 protein -
  R1Y14_RS09855 (R1Y14_09855) - 1916809..1918425 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  R1Y14_RS09860 (R1Y14_09860) - 1918454..1919344 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47013.48 Da        Isoelectric Point: 5.9471

>NTDB_id=816085 R1Y14_RS09840 WP_001113212.1 1913664..1914935(+) (rarA) [Streptococcus pneumoniae strain ST62]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=816085 R1Y14_RS09840 WP_001113212.1 1913664..1914935(+) (rarA) [Streptococcus pneumoniae strain ST62]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTACTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTAGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567