Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R1Y14_RS08715 Genome accession   NZ_CP136899
Coordinates   1694685..1695407 (-) Length   240 a.a.
NCBI ID   WP_001010373.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ST62     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689685..1700407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y14_RS08705 (R1Y14_08705) - 1692259..1693425 (-) 1167 WP_000521385.1 MalY/PatB family protein -
  R1Y14_RS08710 (R1Y14_08710) - 1693433..1694527 (-) 1095 WP_000031959.1 cystathionine gamma-synthase -
  R1Y14_RS08715 (R1Y14_08715) rcrP 1694685..1695407 (-) 723 WP_001010373.1 ABC transporter ATP-binding protein Regulator
  R1Y14_RS08720 (R1Y14_08720) - 1695432..1696367 (-) 936 WP_000768996.1 ABC transporter ATP-binding protein -
  R1Y14_RS08725 (R1Y14_08725) amiA 1696539..1698497 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  R1Y14_RS08730 (R1Y14_08730) - 1698701..1700323 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27192.08 Da        Isoelectric Point: 5.4211

>NTDB_id=816073 R1Y14_RS08715 WP_001010373.1 1694685..1695407(-) (rcrP) [Streptococcus pneumoniae strain ST62]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGYILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEGGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=816073 R1Y14_RS08715 WP_001010373.1 1694685..1695407(-) (rcrP) [Streptococcus pneumoniae strain ST62]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGATATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGGGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371