Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   R1T10_RS06345 Genome accession   NZ_CP136807
Coordinates   1308242..1308859 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis NMB     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1303242..1313859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T10_RS06330 - 1304430..1306058 (-) 1629 WP_002224512.1 ABC-F family ATPase -
  R1T10_RS06335 - 1306208..1306582 (+) 375 WP_002220962.1 arsenate reductase -
  R1T10_RS06340 - 1306637..1308175 (+) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  R1T10_RS06345 recR 1308242..1308859 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  R1T10_RS06350 - 1308915..1309193 (-) 279 WP_002220967.1 hypothetical protein -
  R1T10_RS06355 - 1309398..1310645 (+) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  R1T10_RS06360 lolD 1310638..1311333 (+) 696 WP_002226350.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  R1T10_RS06365 recD 1311401..1313146 (+) 1746 WP_002226351.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=815852 R1T10_RS06345 WP_002217147.1 1308242..1308859(+) (recR) [Neisseria meningitidis NMB]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=815852 R1T10_RS06345 WP_002217147.1 1308242..1308859(+) (recR) [Neisseria meningitidis NMB]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366