Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   M0M55_RS26580 Genome accession   NZ_CP136800
Coordinates   5741739..5742263 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain A6-17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5736739..5747263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M55_RS26565 (M0M55_26565) aroB 5737855..5738961 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  M0M55_RS26570 (M0M55_26570) aroK 5739011..5739529 (-) 519 WP_003095833.1 shikimate kinase AroK -
  M0M55_RS26575 (M0M55_26575) pilQ 5739541..5741685 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  M0M55_RS26580 (M0M55_26580) comL/pilP 5741739..5742263 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  M0M55_RS26585 (M0M55_26585) pilO 5742260..5742883 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  M0M55_RS26590 (M0M55_26590) pilN 5742880..5743476 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  M0M55_RS26595 (M0M55_26595) pilM 5743476..5744540 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  M0M55_RS26600 (M0M55_26600) - 5744725..5747196 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=815787 M0M55_RS26580 WP_003095836.1 5741739..5742263(-) (comL/pilP) [Pseudomonas aeruginosa strain A6-17]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=815787 M0M55_RS26580 WP_003095836.1 5741739..5742263(-) (comL/pilP) [Pseudomonas aeruginosa strain A6-17]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362