Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RYQ61_RS05205 Genome accession   NZ_CP136799
Coordinates   993182..995536 (-) Length   784 a.a.
NCBI ID   WP_102568114.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988182..1000536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS05190 (RYQ61_05190) pflB 988685..991000 (-) 2316 WP_003074645.1 formate C-acetyltransferase -
  RYQ61_RS05195 (RYQ61_05195) - 991229..991888 (+) 660 WP_102568116.1 hypothetical protein -
  RYQ61_RS05200 (RYQ61_05200) dinB 991907..992971 (+) 1065 WP_102568115.1 DNA polymerase IV -
  RYQ61_RS05205 (RYQ61_05205) recD/recD2/recDB 993182..995536 (-) 2355 WP_102568114.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RYQ61_RS05210 (RYQ61_05210) lepB 995762..996376 (-) 615 WP_020998280.1 signal peptidase I -
  RYQ61_RS05215 (RYQ61_05215) rnhC 996380..997270 (-) 891 WP_102568113.1 ribonuclease HIII -
  RYQ61_RS05220 (RYQ61_05220) - 997356..997661 (+) 306 WP_003074635.1 hypothetical protein -
  RYQ61_RS05225 (RYQ61_05225) - 997658..998206 (+) 549 WP_102568112.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88389.45 Da        Isoelectric Point: 4.6068

>NTDB_id=815664 RYQ61_RS05205 WP_102568114.1 993182..995536(-) (recD/recD2/recDB) [Streptococcus intermedius strain XH2169]
MEFYFSGTIERIIFENPSSFFRILLLNIDDTDADFDDFEIIVTGTMADIIEGEDYTFWGNLVQHPKYGEQLKLIRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLHDIVGLSAKNREAFIMKLRQNYGTERVLAKLSEYG
ISNKLAFQIQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIESTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPNSVADELAHLIEEDKVQNVDTKIFENSLFFAEEGICNNLLRILEKGNQNKYEPENIEAAL
AQIEEKFAISYDAIQKQAICDAIQHKIFILTGGPGTGKTTVINGIISIYALLHGLDLHKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQGEDSTIVTLASQIQKGTLPIDFIEKKADRSYFEVRSEQIPQMIERIVEVAIRSGIPAQDVQVL
APMYRGQAGIDHINQLMQDLINPVVKEQLIFEATDGQYRQGDRVIHLVNDAESNVFNGDLGYITDLLPAKYADSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITASSHRMLQRNLIYTAITRAKSKLILLGEKSAFAFAVKN
TGTTRKTYLLQRFANLPTDEKIMHTSVDDLETSVEDYVLTEENFSKINPMIGLTEEDIHSIFGN

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=815664 RYQ61_RS05205 WP_102568114.1 993182..995536(-) (recD/recD2/recDB) [Streptococcus intermedius strain XH2169]
ATGGAATTTTACTTTTCAGGTACCATCGAACGCATTATCTTTGAAAATCCCAGCAGTTTTTTCCGGATTCTGTTGCTAAA
TATTGACGACACCGATGCGGATTTTGATGATTTTGAGATTATTGTCACCGGCACTATGGCAGATATTATAGAGGGGGAAG
ACTATACCTTCTGGGGAAATCTCGTGCAACACCCTAAATATGGTGAACAGCTCAAACTAATACGCTATGAGCGTGCTAAA
CCAACCAGCAAAGGCTTGGTCAAATATTTTTCAAGCGACCATTTTAAAGGAATCGGTGTAAAAACAGCACAAAAAATTGT
GGATCTCTACGGCGATAACACGATTGATAAGGTCTTGGCAGAACCCGAAAAATTACATGATATTGTAGGCCTTTCTGCTA
AAAATCGCGAAGCCTTTATTATGAAATTAAGACAGAACTACGGTACCGAGCGAGTCCTTGCAAAGCTATCTGAGTACGGC
ATTTCAAATAAACTTGCCTTTCAGATTCAAGATTTTTACAAAGAAGAGACTCTCGAAATTGTCGAACACTATCCTTATCA
GTTAGTGGAAGATATTCAAGGAATAGGATTTAAAATTGCCGACCAACTGGCGCAAAGTTTAGGAATTGAAAGTACTGCTC
CAGAGCGCTTCCGTGCAGGATTACTCCACACACTTCTAACCCAGTCCATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAGCTTCTGGAACACACCATTGAACTTCTGGAAAGCTCCCGACAGATCGAACTAGATCCAAATTCCGTTGCAGATGAGCT
AGCTCATTTGATTGAAGAAGATAAAGTCCAAAATGTCGATACGAAGATTTTTGAAAACAGTCTTTTTTTTGCTGAAGAAG
GAATCTGCAACAATCTCTTACGCATTCTGGAGAAGGGAAATCAAAATAAATATGAACCAGAAAACATCGAAGCTGCGCTT
GCTCAAATCGAAGAAAAATTTGCTATTTCTTACGATGCGATTCAGAAGCAAGCTATTTGCGATGCTATCCAGCATAAAAT
TTTCATCTTAACAGGTGGTCCTGGAACTGGAAAAACGACTGTTATCAATGGAATTATTTCTATCTACGCGCTGCTACATG
GTCTGGATTTACACAAATCTCAAGATTTACCTATCCTTTTAGCTGCTCCAACTGGGCGCGCTGCTAGACGCATGAATGAA
TTGACAGGACTGCCAAGTGCGACGATTCATCGGCATTTAGGCATGACAGGAGACGATGACACCAGTCATTTAGACGATTA
TTTGGACGCAGATTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTACTCAGCAATATCT
CTTCCAATAGCAAGCTACTCATTGTCGGAGATGCCGACCAGCTACCCTCTGTCAGTCCTGGACAAGTGTTAGCAGATTTG
CTGAAAATCCCCCTCCTTCCACAGACCAAATTAGAAAAAATTTATCGGCAGGGCGAAGATTCCACGATCGTTACCTTAGC
TAGTCAGATTCAAAAAGGCACTCTGCCAATTGATTTCATTGAAAAAAAAGCAGATCGTTCTTATTTTGAAGTTCGTAGCG
AGCAGATTCCACAGATGATTGAACGCATTGTGGAAGTCGCTATCCGTAGTGGTATTCCAGCTCAAGATGTACAAGTACTT
GCTCCTATGTACCGTGGACAAGCAGGAATTGACCACATCAATCAACTCATGCAAGATCTGATCAATCCTGTTGTAAAAGA
ACAACTCATCTTTGAAGCTACTGATGGTCAATACCGACAAGGTGATCGGGTTATTCATCTCGTCAACGATGCTGAAAGCA
ATGTGTTCAACGGTGATTTGGGTTATATAACCGATTTACTACCAGCAAAATATGCTGATTCCAAGCAAGATGAACTGACT
ATCAATTTCGATGGCAATGAAATTGTTTATCAACGCAGTGAATGGTATAAAATTCGTCTGGCCTATGCCATGAGCATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTCGTCATTTTACCAATTACCGCCAGCAGCCACCGTATGCTACAGCGCAATCTTA
TCTATACCGCCATCACCCGCGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCTTTTGCCTTTGCTGTGAAAAAT
ACCGGCACCACCCGTAAAACCTATCTCCTTCAACGTTTTGCAAATCTACCAACAGATGAAAAAATAATGCACACTTCTGT
GGATGATTTGGAAACAAGCGTGGAAGACTATGTCTTGACTGAAGAAAATTTTTCGAAAATAAATCCTATGATCGGACTGA
CTGAAGAAGATATCCACAGTATCTTTGGCAACTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)

AAA domain (AAA_30)

(331-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42

95.663

0.402