Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RYQ61_RS02390 Genome accession   NZ_CP136799
Coordinates   471148..472419 (+) Length   423 a.a.
NCBI ID   WP_102568301.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 466148..477419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS02360 (RYQ61_02360) - 467511..467654 (-) 144 WP_172964140.1 hypothetical protein -
  RYQ61_RS02365 (RYQ61_02365) - 467819..468562 (-) 744 WP_048785623.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RYQ61_RS02370 (RYQ61_02370) prmA 468563..469516 (-) 954 WP_301337252.1 50S ribosomal protein L11 methyltransferase -
  RYQ61_RS02375 (RYQ61_02375) - 469661..470131 (-) 471 WP_102568298.1 GNAT family N-acetyltransferase -
  RYQ61_RS02380 (RYQ61_02380) - 470128..470580 (-) 453 WP_102568299.1 NUDIX hydrolase -
  RYQ61_RS02385 (RYQ61_02385) - 470590..471060 (-) 471 WP_102568300.1 DUF3013 family protein -
  RYQ61_RS02390 (RYQ61_02390) rarA 471148..472419 (+) 1272 WP_102568301.1 replication-associated recombination protein A Machinery gene
  RYQ61_RS02400 (RYQ61_02400) - 473161..473970 (+) 810 WP_102568309.1 HAD family hydrolase -
  RYQ61_RS02405 (RYQ61_02405) - 473981..474925 (+) 945 WP_021003233.1 LacI family DNA-binding transcriptional regulator -
  RYQ61_RS02410 (RYQ61_02410) - 475494..475806 (-) 313 Protein_469 hypothetical protein -
  RYQ61_RS02415 (RYQ61_02415) - 475961..476728 (-) 768 WP_102568311.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46899.43 Da        Isoelectric Point: 6.0226

>NTDB_id=815628 RYQ61_RS02390 WP_102568301.1 471148..472419(+) (rarA) [Streptococcus intermedius strain XH2169]
MPENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIRTAIR
LALTDKERGFDFPVELDDEALDFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYLAMDKALSDLRKNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHSYPGNWVKQDYLPDKIKDANYFTP
NQNGKYERALGMTKDKIDHLKKD

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=815628 RYQ61_RS02390 WP_102568301.1 471148..472419(+) (rarA) [Streptococcus intermedius strain XH2169]
ATGCCAGAAAACCTCGCCCTGCGCATGCGACCTACTGACATTGATCAGATCATCGGCCAGCAGCATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTGTCCTCGATGATCCTCTACGGACCACCCGGCATCGGCAAAACTT
CTATCGCCTCAGCTATTGCCGGCACAACCAAATATGCCTTTCGGACCTTTAACGCTACCGTAGATAGCAAGAAGCGCCTG
CAAGAGATCGCGGAAGAAGCGAAATTCTCTGGAGGATTGGTGCTCCTGCTAGATGAGATTCACCGTTTGGATAAAACAAA
ACAAGACTTTCTACTGCCGCTATTAGAAAGCGGTCTGGTCATCATGATAGGAGCGACGACAGAAAACCCTTTCTTTTCTG
TCACCCCTGCTATTCGAAGCCGAGTTCAGATATTTGAGCTTGAGCCCCTCAGCAACGAAGACATCCGGACAGCTATTCGG
CTAGCCTTGACGGATAAGGAACGAGGATTTGATTTCCCAGTGGAGCTAGACGATGAAGCTCTGGATTTCATTGCTATCTC
TACCAACGGAGACCTGCGCTCCGCCTATAACTCGCTGGACCTAGCCGTACTCTCTACCCCTGAAGATGACAAGGGCATCC
GTCACATCACGCTCGATGTGATGGAAAACAGTCTGCAAAAGAGCTACATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAAAAGTCCATCCGCGGCTCCGATGTCAATGCCAGTCTCCACTACGCAGCACGCCTCGTTGA
GGCAGGAGACCTGCCTAGCCTAGCTCGACGTTTGACCGTTATCGCTTACGAAGATATTGGCCTGGCAAATCCAGACGCTC
AAGTTCATACCGTTACAGCTCTAGAAGCTGCCCAACGGATCGGCTTTCCCGAAGCCCGTATCCTCATCGCCAATATTGTT
ATCGATCTGGCTCTATCTCCCAAATCCAACTCAGCCTACCTAGCCATGGATAAAGCCTTATCCGACCTACGAAAGAATGG
AAACCTGCCCATTCCTCGCCACTTACGCGACGGTCACTATGCTGGCAGTAAGGAGCTAGGTAACGCACAGGATTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAAGACTATCTGCCTGACAAGATTAAAGATGCCAATTATTTCACTCCA
AACCAAAATGGCAAATACGAGCGAGCCCTTGGAATGACCAAGGATAAGATTGATCACCTCAAAAAAGACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.386

97.872

0.591