Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RYQ61_RS01630 Genome accession   NZ_CP136799
Coordinates   303182..303970 (-) Length   262 a.a.
NCBI ID   WP_003035535.1    Uniprot ID   I0SFK2
Organism   Streptococcus intermedius strain XH2169     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 298182..308970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS01610 (RYQ61_01610) gatA 298646..300112 (-) 1467 WP_117276463.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  RYQ61_RS01615 (RYQ61_01615) gatC 300112..300414 (-) 303 WP_021003144.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  RYQ61_RS01620 (RYQ61_01620) aspS 300479..302227 (-) 1749 WP_317289735.1 aspartate--tRNA ligase -
  RYQ61_RS01625 (RYQ61_01625) - 302607..303182 (-) 576 WP_020999076.1 cysteine hydrolase family protein -
  RYQ61_RS01630 (RYQ61_01630) codY 303182..303970 (-) 789 WP_003035535.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RYQ61_RS01635 (RYQ61_01635) - 304132..305346 (-) 1215 WP_003074453.1 pyridoxal phosphate-dependent aminotransferase -
  RYQ61_RS01640 (RYQ61_01640) - 305499..305951 (+) 453 WP_003028799.1 universal stress protein -
  RYQ61_RS01645 (RYQ61_01645) - 305997..307385 (-) 1389 WP_082312149.1 Cof-type HAD-IIB family hydrolase -
  RYQ61_RS01650 (RYQ61_01650) - 307450..308412 (+) 963 WP_082312148.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29724.06 Da        Isoelectric Point: 5.0797

>NTDB_id=815616 RYQ61_RS01630 WP_003035535.1 303182..303970(-) (codY) [Streptococcus intermedius strain XH2169]
MANLLAKTRKITSILRRSDERLQDELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHDLSIFPIETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELSGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDIFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=815616 RYQ61_RS01630 WP_003035535.1 303182..303970(-) (codY) [Streptococcus intermedius strain XH2169]
ATGGCAAACTTATTAGCAAAAACAAGAAAAATAACATCTATTTTGCGTCGTTCAGATGAGCGATTGCAGGATGAACTACC
TTATAATGCAATTACCCAACAATTAGCTGAAATTATGGATTGCAATGCTTGTATTGTAAATAGCAAGGGTCGTCTTTTGG
GGTATTTCATGCGCTACAAGACAAACAATGATCGTGTGGAAGCATTTTATCAAACGAAAATCTTCCCAGAAGAGTATGTT
CGCACCGCAAATTTGATGTATGATACTGAGGCCAATCTTCCAGTCAATCATGATTTATCTATTTTTCCTATTGAGACAAA
AGATGAATTTCCAGATGGCTTGACGACAATTTCACCAATTCATGTTTCTGGGATTCGTTTAGGGACATTGATTGTTTGGC
GCAATGATAAAGAATTTGACGATGATGATTTGATCTTGGTTGAAATTGCAAGTACAGTGGTTGGTATTCAGCTACTCAAC
TTCCAACGAGAAGAAGATGAAAAAAATATTCGACGTCGAACAGCTGTAACTATGGCTGTAAATACTTTGTCTTATTCAGA
ATTACGAGCTGTTTCTGCTATTTTAGGTGAATTAAGCGGCAATGAAGGGCAGCTAACAGCTTCAGTGATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCTCTACGTAAACTAGAAAGTGCAGGCATTATCGAAAGTCGTTCTCTAGGA
ATGAAAGGAACCTATCTTAAAGTTCTTATCCCTGATATCTTTGAAGAGATTAAAAAGCGAGATTACTGA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50

93.893

0.469