Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   R1Y80_RS11865 Genome accession   NZ_CP136798
Coordinates   2619094..2621319 (-) Length   741 a.a.
NCBI ID   WP_354596986.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2614094..2626319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS11850 (R1Y80_11830) - 2614178..2614495 (+) 318 WP_100564040.1 heavy-metal-associated domain-containing protein -
  R1Y80_RS11855 (R1Y80_11835) - 2614619..2617045 (+) 2427 WP_354596985.1 heavy metal translocating P-type ATPase -
  R1Y80_RS11860 (R1Y80_11840) - 2617580..2618878 (-) 1299 WP_006124608.1 citrate synthase -
  R1Y80_RS11865 (R1Y80_11845) recD/recD2/recDB 2619094..2621319 (-) 2226 WP_354596986.1 ATP-dependent RecD-like DNA helicase Machinery gene
  R1Y80_RS11870 (R1Y80_11850) - 2621656..2622357 (-) 702 WP_354596987.1 response regulator transcription factor -
  R1Y80_RS11875 (R1Y80_11855) - 2622440..2623546 (-) 1107 WP_354596988.1 histidine kinase -
  R1Y80_RS11880 (R1Y80_11860) - 2623739..2624323 (+) 585 WP_109198285.1 hypothetical protein -
  R1Y80_RS11885 (R1Y80_11865) - 2624349..2624918 (-) 570 WP_354596989.1 CGNR zinc finger domain-containing protein -
  R1Y80_RS11890 (R1Y80_11870) - 2625080..2626258 (+) 1179 WP_354598886.1 epoxide hydrolase family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79939.49 Da        Isoelectric Point: 6.7864

>NTDB_id=815550 R1Y80_RS11865 WP_354596986.1 2619094..2621319(-) (recD/recD2/recDB) [Streptomyces sp. JL1001]
MSNMAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHSQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEREPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSSDQGHCYLPEERL
IADGVKLLQVDTGLVIECLAELAADPEGVVREKVPSPEGGEPITAVYLVPFHRAELSLAGQVRRLLRTEEDRMPAFRDVD
WGKALAWLATRTGASLAPEQEEAVRLALSRKVAVLTGGPGCGKSFTVRSIVELARAKRAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLSDLLAE
GGPVPAVRLTRIFRQAQQSGVVTNAHRINAGQPPLTEGLSDFFLFVEDETEDAGKLAVDVAARRIPAKFGLNARRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGIVTGLDVDEQKLTVRT
DEDEEIGYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLRGGSGEDFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=815550 R1Y80_RS11865 WP_354596986.1 2619094..2621319(-) (recD/recD2/recDB) [Streptomyces sp. JL1001]
ATGTCCAACATGGCCGTCCTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGGCGCGGAGCCGGCGACCTCCTCACCGTGGTCGGTGCGCTGCTCGGCGCGCAGGTCGGTGAGTCGCTGC
GGATGGAGGGCCGCTGGGGCTCGCACTCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTGCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCCGGGCTGATCAAGGGCATCGGGCCGGTGATGGCCGACCGGATCACCAC
CCACTTCGGCGTCGACACCCTCGACATCATCGAGCGGGAACCGAAGCGGCTCGTCGAGGTCCCCGGCCTCGGCCCCAAGC
GCACGAAGATGATCGCGGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCGGACAAGATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGACTGCAGTACGCCCTGTCCCAGTCCTCCGACCAGGGGCACTGCTATCTCCCGGAGGAACGGCTC
ATCGCGGACGGCGTCAAGCTCCTCCAGGTCGACACCGGGCTGGTCATCGAGTGCCTGGCCGAGCTGGCCGCCGATCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGTCCCCCGAGGGCGGCGAGCCGATCACGGCGGTCTACCTCGTCCCGTTCCACCGGG
CCGAGCTGTCCCTCGCCGGGCAGGTGCGGCGGCTGCTGCGGACGGAGGAAGACCGGATGCCGGCCTTCCGGGACGTCGAC
TGGGGCAAGGCGCTGGCCTGGCTCGCCACGCGTACGGGGGCCTCGCTGGCGCCCGAGCAGGAGGAGGCCGTACGTCTCGC
GCTCAGCCGCAAGGTGGCCGTCCTGACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTCCGCTCGATCGTCGAGCTGG
CCCGGGCGAAGAGGGCCAAGGTGGTGCTCGCCGCCCCCACCGGGCGCGCCGCCAAACGCCTCTCCGAGCTGACCGGGGCC
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCCGCGTACGACCGGGACCGTCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTGAAGGCGGTGGCACCCGGTG
CCCACCTCCTCCTGGTGGGCGATGTCGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTGCTGAGCGATCTGCTCGCGGAG
GGCGGTCCGGTCCCCGCCGTCCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGTCACCAACGCACACCG
CATCAACGCCGGACAGCCACCCCTCACCGAGGGGCTGAGCGACTTCTTCCTCTTCGTGGAGGACGAGACGGAGGACGCGG
GCAAGCTCGCCGTCGATGTCGCGGCCCGCCGCATTCCGGCCAAGTTCGGTCTCAACGCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGGGGCCCGGCCGGCGCGGGCCATCTGAACGGGCTGCTCCAGCAGGCCATCACCCCGGGCCGCCCCGA
CCTCCCCGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGACAAGG
GCGAGAACGGCGTCTTCAACGGCACCGTCGGCATCGTCACCGGCCTCGACGTGGACGAGCAGAAGCTCACCGTCCGCACC
GACGAGGACGAGGAGATCGGCTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCATGACGATCCACCGCTC
CCAGGGCAGCGAGTATCCGGCCGTCGTCATCCCCGTCACCACCAGCGCCTGGATGATGCTCCAGCGCAACCTGCTCTACA
CGGCCGTCACGAGGGCCAAGAAGCTCGTCGTGCTCGTCGGGTCCCGTAAGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCAGGCAGGCGTTGTACGGCACTGGATTTCCGGCTTCGGGGCGGCTCCGGCGAAGACTTCTCGTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-143)

AAA domain (AAA_30)

(336-514)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.387

100

0.364