Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R1Y80_RS10565 Genome accession   NZ_CP136798
Coordinates   2319934..2321667 (+) Length   577 a.a.
NCBI ID   WP_100560524.1    Uniprot ID   -
Organism   Streptomyces sp. JL1001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2314934..2326667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Y80_RS10530 (R1Y80_10510) - 2315644..2316168 (-) 525 WP_100560521.1 hypothetical protein -
  R1Y80_RS10535 (R1Y80_10515) - 2316165..2317013 (-) 849 WP_354596902.1 hypothetical protein -
  R1Y80_RS10555 (R1Y80_10535) - 2317953..2318258 (+) 306 WP_006124242.1 hypothetical protein -
  R1Y80_RS10560 (R1Y80_10540) - 2318327..2319778 (+) 1452 WP_109178425.1 FGGY family carbohydrate kinase -
  R1Y80_RS10565 (R1Y80_10545) rcrP 2319934..2321667 (+) 1734 WP_100560524.1 ABC transporter ATP-binding protein Regulator
  R1Y80_RS10570 (R1Y80_10550) - 2321667..2322947 (+) 1281 Protein_2093 ABC transporter ATP-binding protein -
  R1Y80_RS10575 (R1Y80_10555) - 2323957..2324619 (-) 663 Protein_2094 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62242.28 Da        Isoelectric Point: 5.2460

>NTDB_id=815544 R1Y80_RS10565 WP_100560524.1 2319934..2321667(+) (rcrP) [Streptomyces sp. JL1001]
MLIQLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTGSSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLARTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=815544 R1Y80_RS10565 WP_100560524.1 2319934..2321667(+) (rcrP) [Streptomyces sp. JL1001]
GTGCTCATACAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTTCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATTGACAACGGTGTCGTCACGGGTGACACCGGTTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTTCTCCAGGTTCTGTGCAACGTGGGGGCCGTGTACTACGGGGCC
CGCACCGCCTCCGCCCTCGGGCGTGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTGGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGTGTCTCGGTCGGGCTCATCGTGCGGAAGATGGGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCACACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGGGTCGAGTGTCGTGCCG
CCCGTCGCACCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTACCCGGGTGCCGA
GGAGCCGGTGCTGCGGAACGTCGATCTGGTGGCCCGGCCGGGTGAGACCACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAGGACGGTGTCGCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAATCTGCGGTACGGGAACCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGTTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGAGGCGCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCACAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGCACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.451

100

0.399