Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   P8596_RS16445 Genome accession   NZ_CP122397
Coordinates   3144337..3146700 (-) Length   787 a.a.
NCBI ID   WP_279724364.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3139337..3151700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS16430 (P8596_16430) dtd 3140933..3141376 (-) 444 WP_254651863.1 D-aminoacyl-tRNA deacylase -
  P8596_RS16435 (P8596_16435) - 3141390..3143579 (-) 2190 WP_254651864.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  P8596_RS16440 (P8596_16440) - 3143834..3144346 (-) 513 WP_279724363.1 adenine phosphoribosyltransferase -
  P8596_RS16445 (P8596_16445) recJ 3144337..3146700 (-) 2364 WP_279724364.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  P8596_RS16450 (P8596_16450) - 3147013..3147348 (-) 336 WP_034757294.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  P8596_RS16455 (P8596_16455) - 3147364..3148290 (-) 927 WP_159362291.1 cation diffusion facilitator family transporter -
  P8596_RS16460 (P8596_16460) secDF 3148393..3150657 (-) 2265 WP_279724365.1 protein translocase subunit SecDF -
  P8596_RS16465 (P8596_16465) - 3150789..3151109 (-) 321 WP_098439761.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88583.80 Da        Isoelectric Point: 4.8579

>NTDB_id=815356 P8596_RS16445 WP_279724364.1 3144337..3146700(-) (recJ) [Rossellomorea sp. DA94]
MLNSKTRWILTETDEHKIAELANELKVPSLVAKLLINRDLDDVEEARNFLFDSGDSFHDPFLFEDMKKATERIHKAIQDG
ERILVYGDYDADGVSSTSVMMTVLRDLGAEVEFYIPNRFSEGYGPNEGAFRWAKDEEFSLIITVDTGISAVNEAKLAKDL
GMDLIITDHHEPGPELPETYALLHPKVGEAAYPFGELAGVGVAFKLAHALYGELPTHLLDLAAIGTIADLVPLRGENRLL
AKRGLAELRGSNRLGIKALCKIANAKQHEITEETVGFMIAPRINAVGRLGDADPAVDLMLTEDEEEAKALAEEIDGLNKE
RQAIVAQMTEEAVEMVERDFPLKDNHVLVIGKEGWNPGVVGIVASRLVDKFYRPTIVLSYDSEKGTAKGSARSIVGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLDDVDHLRSRLNELAGTELTSEDFIPVTQLDAPVTVDEITVESIEKLQLLAPFGM
KNPKPKWIIDNVSIEHYKKIGSAQNHLKLVLGDEGIQLDGVGFGLGELADHMTPFSNASVIGELSINEWNNRKKPQVFLH
DVKIDHWQLFDVRGIKQVHKWNGLIPEENKKLICFHPSTLDKLNLPKDEVILLEGSSTLDGLSTEKASLVLLDLPNSKPL
LEELLKKGRPHRIYAHFFQEEDHFFSTMPTRDHFKWYYGFLTKRGSFDIKKHGDDLAKYKGWSKETIDFMSQVFFDLKFV
TIDNGFISLNPAKTKKDLSESRTYQKKQQQYELENELLYSSYQELKTWFNERIEESVTIEEEVEAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=815356 P8596_RS16445 WP_279724364.1 3144337..3146700(-) (recJ) [Rossellomorea sp. DA94]
ATGTTAAACTCAAAAACACGTTGGATATTGACAGAAACAGATGAACATAAAATAGCAGAATTGGCAAATGAACTAAAAGT
ACCTTCGCTTGTAGCGAAATTATTGATAAATCGTGATTTGGATGATGTAGAAGAAGCCCGGAATTTTTTATTTGATTCTG
GCGATTCATTTCACGATCCATTTTTATTTGAAGATATGAAAAAAGCAACGGAACGGATCCATAAGGCCATCCAAGACGGA
GAGAGAATTCTTGTCTACGGTGACTATGATGCTGACGGGGTCAGCTCAACGTCTGTTATGATGACGGTCCTGAGAGATCT
TGGCGCTGAAGTGGAATTTTATATCCCAAACCGTTTCAGCGAAGGATACGGCCCGAATGAAGGGGCGTTCCGCTGGGCTA
AGGATGAGGAATTCTCGCTCATTATCACGGTCGATACAGGAATTTCTGCCGTGAACGAAGCTAAACTCGCGAAAGATCTC
GGGATGGATCTGATTATTACAGACCACCATGAACCTGGACCCGAATTACCGGAAACCTATGCTCTACTCCATCCAAAAGT
GGGTGAAGCAGCCTATCCGTTCGGTGAACTTGCCGGGGTAGGAGTGGCATTTAAATTGGCCCATGCCCTATACGGTGAAT
TGCCTACACATTTACTGGATCTTGCCGCGATTGGAACCATTGCGGATCTCGTTCCCTTGAGAGGGGAAAACCGCCTTCTG
GCTAAACGGGGTCTTGCAGAGCTCCGGGGTTCAAACCGACTGGGGATCAAAGCTCTATGCAAAATCGCCAATGCGAAGCA
GCATGAAATTACCGAAGAGACAGTCGGCTTCATGATCGCTCCACGGATCAATGCCGTCGGTCGTTTAGGTGATGCCGATC
CTGCCGTTGACCTCATGCTTACAGAAGACGAAGAAGAGGCCAAGGCACTGGCAGAGGAAATTGACGGCTTGAATAAAGAA
AGACAGGCGATCGTCGCCCAGATGACCGAGGAAGCCGTTGAGATGGTGGAGCGGGACTTCCCGCTTAAGGATAACCATGT
ACTCGTCATCGGAAAAGAAGGCTGGAATCCGGGAGTTGTCGGGATTGTGGCTTCCCGCCTTGTCGACAAATTTTACCGGC
CGACCATCGTGCTGAGCTACGACTCTGAAAAAGGGACGGCGAAAGGGTCTGCGAGAAGCATCGTTGGTTTTGATCTATTT
AAAAATCTATCAACCTGCCGGGATATCCTTCCCCACTTCGGAGGACATCCGATGGCTGCCGGAATGACGCTGCAATTAGA
CGATGTAGATCACTTGAGAAGCCGGTTGAATGAACTGGCCGGCACGGAACTGACATCCGAAGACTTCATCCCTGTCACAC
AACTCGATGCTCCTGTGACTGTGGACGAAATCACTGTTGAGTCGATTGAAAAGCTTCAGCTTTTGGCGCCTTTTGGAATG
AAAAATCCAAAGCCTAAGTGGATCATCGATAATGTGAGCATCGAGCACTATAAAAAAATCGGCTCTGCACAAAATCATCT
GAAGCTCGTTTTAGGGGACGAGGGTATTCAATTGGATGGTGTAGGCTTCGGGCTTGGTGAATTGGCTGACCACATGACAC
CTTTTTCCAATGCGTCCGTCATTGGTGAACTATCCATAAATGAGTGGAACAACCGCAAGAAGCCCCAGGTGTTTTTACAT
GATGTGAAAATCGATCATTGGCAATTATTCGATGTGCGGGGAATCAAGCAGGTCCATAAATGGAACGGACTCATCCCAGA
AGAAAATAAGAAGTTGATTTGTTTTCATCCATCCACGTTGGACAAACTGAACCTGCCGAAAGATGAAGTCATCCTCCTGG
AGGGAAGCTCGACTCTTGATGGGTTATCAACGGAGAAAGCGAGCCTTGTGCTCTTGGATCTGCCGAATTCCAAGCCTTTA
CTTGAAGAGCTTTTGAAGAAGGGGCGTCCTCACCGGATCTATGCTCATTTCTTCCAGGAAGAAGATCATTTCTTCAGTAC
GATGCCGACCCGGGACCACTTCAAATGGTACTACGGCTTTTTAACCAAACGTGGATCGTTCGATATCAAAAAGCATGGCG
ATGACCTCGCTAAATACAAAGGCTGGTCAAAAGAAACAATCGATTTCATGTCACAGGTGTTTTTTGATTTGAAGTTTGTT
ACAATAGACAATGGATTTATTTCTCTTAATCCTGCGAAAACCAAGAAAGATCTTTCTGAATCTCGAACATATCAGAAGAA
ACAACAACAATACGAGCTTGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGACTTGGTTTAATGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAGAAGCATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.242

98.729

0.555