Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P8596_RS16340 Genome accession   NZ_CP122397
Coordinates   3121761..3124160 (-) Length   799 a.a.
NCBI ID   WP_279724354.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3116761..3129160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS16315 (P8596_16315) - 3118269..3119348 (-) 1080 WP_224519463.1 AI-2E family transporter -
  P8596_RS16320 (P8596_16320) - 3119480..3119620 (-) 141 WP_094075150.1 YrzQ family protein -
  P8596_RS16325 (P8596_16325) - 3119627..3119812 (-) 186 WP_034757353.1 hypothetical protein -
  P8596_RS16330 (P8596_16330) bioB 3120007..3121014 (-) 1008 WP_279724352.1 biotin synthase BioB -
  P8596_RS16335 (P8596_16335) - 3121030..3121626 (-) 597 WP_279724353.1 biotin transporter BioY -
  P8596_RS16340 (P8596_16340) recD2 3121761..3124160 (-) 2400 WP_279724354.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P8596_RS16345 (P8596_16345) - 3124178..3124849 (-) 672 WP_279724355.1 tetratricopeptide repeat protein -
  P8596_RS16350 (P8596_16350) mnmA 3125005..3126120 (-) 1116 WP_279724356.1 tRNA 2-thiouridine(34) synthase MnmA -
  P8596_RS16355 (P8596_16355) - 3126171..3127313 (-) 1143 WP_279724357.1 cysteine desulfurase family protein -
  P8596_RS16360 (P8596_16360) - 3127327..3127746 (-) 420 WP_034757332.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90356.00 Da        Isoelectric Point: 4.8036

>NTDB_id=815355 P8596_RS16340 WP_279724354.1 3121761..3124160(-) (recD2) [Rossellomorea sp. DA94]
MSQQDSLKLFGEEEIYIKGRHLVTIFHNEENLYSVVRIRVDETNDSYEDKEAVVTGNFPKIHEDDTYIFYGRFQEHPRFG
MQFHAKHFKKEIPQTTQGVVHYLSSDLFKGIGKKTAEKIVEHIGENAISKILENPSLLDEIPKLPKEKAKSIYDTLSEHQ
GLERVMIMLNELGFGPQISMKVYQAYKEQALEIIQKNPYKLVEDIEGIGFTRADELGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPERIEYTDISTQLVSLEEESKVIGEGTKVYVPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIQGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGQEGFQSDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPDDIQVIF
VGDEDQLPSVGPGQVLKDLLNSESVPTVRLTDIYRQEEGSSIIELAHYMKRGQVPADLTKQQKDRSFFPCRTNQISEVVQ
KVVENAKKKGYSPKDIQVLAPMYRGPAGIDRLNELLQEIFNSNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIG
EIVSIFYAKENTEKQDMIIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRS
KQFLILCGELDAFKLGVEREDDFLRKTTLSEKLRGILHDEGSHVEEDLSEGDIPIEEVLLNEDPMIGMEGISPYDFMKA

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=815355 P8596_RS16340 WP_279724354.1 3121761..3124160(-) (recD2) [Rossellomorea sp. DA94]
TTGAGCCAGCAAGACTCTTTAAAGCTGTTTGGTGAGGAAGAAATATATATAAAAGGAAGGCATCTTGTCACGATTTTTCA
TAATGAGGAGAACCTTTATTCGGTGGTCAGAATCCGTGTGGATGAAACGAATGATTCTTATGAGGATAAAGAAGCGGTCG
TAACCGGGAATTTCCCTAAGATACATGAAGATGATACCTATATATTTTATGGGAGATTTCAAGAGCATCCAAGATTTGGC
ATGCAGTTTCATGCCAAGCATTTCAAGAAAGAAATACCCCAAACCACACAGGGTGTCGTCCATTATTTATCAAGTGATCT
CTTCAAAGGGATCGGGAAAAAAACAGCTGAAAAGATCGTTGAGCATATCGGGGAAAATGCGATCAGTAAAATACTCGAAA
ATCCAAGCCTTTTAGATGAAATTCCAAAGCTTCCAAAGGAAAAGGCTAAGAGTATCTATGATACGTTATCTGAGCATCAG
GGACTCGAGCGGGTCATGATCATGCTGAATGAGCTTGGATTCGGTCCCCAGATTTCCATGAAGGTCTATCAGGCTTACAA
AGAGCAGGCACTTGAAATCATTCAAAAGAATCCTTATAAGCTTGTGGAAGATATTGAAGGGATCGGCTTTACCCGGGCAG
ATGAATTGGGGTCCAAGATTGGTTTGACAGGCAGTCACCCGGACCGGATCAAAGCAGGCTGTTTATATACCCTGGAACAA
ACATGTGTCAAGCAGGGTCATGTGTATCTTGAAGCGGAAGAACTCATTGTTACGGTGAAAGAGCTCCTTGAGAAAAGTCA
GCCAGAAAGAATCGAATACACGGACATTTCCACTCAATTGGTTTCCTTGGAGGAAGAAAGCAAAGTCATCGGTGAAGGGA
CGAAGGTGTATGTTCCTTCCCTCTATTTCTCTGAAAAGGGGATTGTGACGAATATCGAAAAGATATTGTCCCAGACACAG
TATAAAGATCAATTCCCCCAGTCTGAATTCCTTCTGTCACTGGGTGCCCTGGAGGACAGGCTAGGGGTACAGTATGCGCC
TTCTCAAAAGGAAGCCATCGAGACGGCATTGATGTCTCCCATGCTCCTGTTGACGGGTGGACCGGGTACGGGGAAGACCA
CTGTCATTCAGGGGATCGTCGAACTGTTCGCCGATCTTCACGGGTGTTCTTTGGATCCCAAGGATTACAAAGATGAGCCG
TTCCCCGTATTGCTCACGGCCCCTACAGGACGTGCAGCTAAGCGGATGACAGAATCTACGGGGCTGCCGGCCATGACGAT
CCACCGACTCCTCGGATGGAATGGTCAGGAAGGATTTCAGAGCGATGAAGAACGGGCCATCGAGGGCAAGCTGTTGATTG
TGGACGAAGTTTCCATGGTCGACACTTGGCTGGCCCATCAATTGCTGAAGGCTCTGCCTGATGATATTCAAGTGATATTT
GTCGGGGATGAAGATCAATTGCCGTCCGTCGGTCCGGGTCAGGTACTGAAGGACTTGTTGAATTCGGAAAGCGTGCCGAC
TGTCAGGTTGACGGATATATACAGGCAGGAAGAGGGTTCCTCGATCATTGAACTTGCTCACTATATGAAAAGGGGACAGG
TTCCCGCCGATTTGACCAAACAGCAAAAAGATCGTTCGTTCTTTCCCTGCAGGACGAATCAGATTTCAGAGGTCGTTCAG
AAAGTGGTGGAAAATGCCAAGAAGAAGGGCTACTCACCTAAAGATATACAGGTCCTTGCCCCAATGTACAGGGGCCCTGC
AGGGATCGACCGCTTGAATGAACTTCTTCAGGAAATCTTTAATAGTAACGATGGGACACGGAAAGAAATCGCCTTCGGGG
ACGTGAAATACCGGATCGGGGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAAAACAATGTTTTCAACGGGGATATAGGT
GAAATCGTTTCGATCTTTTATGCGAAGGAAAACACCGAGAAACAGGACATGATCATCGTTTCGTATGAAGGCAATGAGGT
CACGTATACACGGCAGGACCTCATGCAAATCACCCATGCGTATTGCTGCTCGATCCATAAATCCCAGGGAAGCGAATTTC
CCATTGTCATTTTACCCGTCGTAAAGAGCTATTACCGGATGTTACGGAGAAATCTCCTATACACGGCCATTACAAGGAGC
AAGCAATTTCTCATTCTCTGCGGAGAGCTGGATGCTTTCAAGCTTGGAGTGGAGAGGGAAGATGATTTTCTCAGGAAAAC
GACCTTGAGTGAGAAGCTGAGAGGCATACTGCATGACGAGGGGAGTCATGTGGAAGAAGATTTATCAGAAGGGGACATAC
CCATTGAAGAAGTCCTTCTGAATGAAGACCCGATGATTGGAATGGAAGGGATCAGCCCTTACGATTTCATGAAGGCATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-660)

AAA domain (AAA_30)

(345-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.905

99.875

0.618