Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PA12_RS30045 Genome accession   NZ_CP136598
Coordinates   6422422..6422946 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6417422..6427946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA12_RS30030 (PA12_gene5855) aroB 6418538..6419644 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PA12_RS30035 (PA12_gene5856) aroK 6419694..6420212 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PA12_RS30040 (PA12_gene5857) pilQ 6420224..6422368 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  PA12_RS30045 (PA12_gene5858) comL/pilP 6422422..6422946 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PA12_RS30050 (PA12_gene5859) pilO 6422943..6423566 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PA12_RS30055 (PA12_gene5860) pilN 6423563..6424159 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PA12_RS30060 (PA12_gene5861) pilM 6424159..6425223 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PA12_RS30065 (PA12_gene5862) - 6425408..6427879 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=815235 PA12_RS30045 WP_003095836.1 6422422..6422946(-) (comL/pilP) [Pseudomonas aeruginosa strain PA12]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=815235 PA12_RS30045 WP_003095836.1 6422422..6422946(-) (comL/pilP) [Pseudomonas aeruginosa strain PA12]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362