Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RZV12_RS23405 Genome accession   NZ_CP136552
Coordinates   4728995..4729462 (+) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli O104:H4 strain rpoS_ATGtoATA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4723995..4734462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV12_RS23360 rplP 4724105..4724515 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  RZV12_RS23365 rpsC 4724528..4725229 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  RZV12_RS23370 rplV 4725247..4725579 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  RZV12_RS23375 rpsS 4725594..4725872 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  RZV12_RS23380 rplB 4725889..4726710 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  RZV12_RS23385 rplW 4726728..4727030 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  RZV12_RS23390 rplD 4727027..4727632 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  RZV12_RS23395 rplC 4727643..4728272 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  RZV12_RS23400 rpsJ 4728305..4728616 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  RZV12_RS23405 pilD 4728995..4729462 (+) 468 WP_000340167.1 A24 family peptidase Machinery gene
  RZV12_RS23410 bfr 4729459..4729935 (-) 477 WP_000675515.1 bacterioferritin -
  RZV12_RS23415 bfd 4730008..4730202 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RZV12_RS23420 tuf 4730385..4731569 (-) 1185 WP_000031783.1 elongation factor Tu -
  RZV12_RS23425 fusA 4731640..4733754 (-) 2115 WP_000124700.1 elongation factor G -
  RZV12_RS23430 rpsG 4733851..4734321 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=815074 RZV12_RS23405 WP_000340167.1 4728995..4729462(+) (pilD) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=815074 RZV12_RS23405 WP_000340167.1 4728995..4729462(+) (pilD) [Escherichia coli O104:H4 strain rpoS_ATGtoATA]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361