Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QA442_RS13805 Genome accession   NZ_CP121861
Coordinates   2654705..2655484 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus stercoris strain Mal05     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2649705..2660484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS13775 (QA442_13775) fliH 2649722..2650474 (-) 753 WP_041521507.1 flagellar assembly protein FliH -
  QA442_RS13780 (QA442_13780) fliG 2650467..2651483 (-) 1017 WP_014663967.1 flagellar motor switch protein FliG -
  QA442_RS13785 (QA442_13785) fliF 2651496..2653106 (-) 1611 WP_040083177.1 flagellar basal-body MS-ring/collar protein FliF -
  QA442_RS13790 (QA442_13790) fliE 2653152..2653472 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QA442_RS13795 (QA442_13795) flgC 2653483..2653935 (-) 453 WP_014663965.1 flagellar basal body rod protein FlgC -
  QA442_RS13800 (QA442_13800) flgB 2653935..2654324 (-) 390 WP_014663964.1 flagellar basal body rod protein FlgB -
  QA442_RS13805 (QA442_13805) codY 2654705..2655484 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QA442_RS13810 (QA442_13810) hslU 2655524..2656927 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  QA442_RS13815 (QA442_13815) clpQ 2656944..2657489 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QA442_RS13820 (QA442_13820) xerC 2657502..2658416 (-) 915 WP_095431299.1 tyrosine recombinase XerC -
  QA442_RS13825 (QA442_13825) trmFO 2658484..2659791 (-) 1308 WP_069149591.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=814915 QA442_RS13805 WP_003220850.1 2654705..2655484(-) (codY) [Bacillus stercoris strain Mal05]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=814915 QA442_RS13805 WP_003220850.1 2654705..2655484(-) (codY) [Bacillus stercoris strain Mal05]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATACACTGCTTTCCCTGTTGAGAACAGAGACTTATTCCA
AGCTGGTTTAACGACAATTGTGCCGATCATCGGAGGAGGGGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTCAATGATGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGTAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCTAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCGGTTATTGTGAACGCACTGAGAAAGCTGGAGAGTGCCGGCGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTAAACAACAAATTCCTAATCGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467