Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QA442_RS08150 Genome accession   NZ_CP121861
Coordinates   1579219..1581615 (+) Length   798 a.a.
NCBI ID   WP_040082303.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574219..1586615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS08125 (QA442_08125) - 1574300..1575565 (-) 1266 WP_095432348.1 replication-associated recombination protein A -
  QA442_RS08130 (QA442_08130) cymR 1575768..1576184 (+) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  QA442_RS08135 (QA442_08135) - 1576203..1577345 (+) 1143 WP_095432347.1 cysteine desulfurase family protein -
  QA442_RS08140 (QA442_08140) mnmA 1577373..1578488 (+) 1116 WP_004398509.1 tRNA 2-thiouridine(34) synthase MnmA -
  QA442_RS08145 (QA442_08145) - 1578574..1579194 (+) 621 WP_231516582.1 tetratricopeptide repeat protein -
  QA442_RS08150 (QA442_08150) recD2 1579219..1581615 (+) 2397 WP_040082303.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QA442_RS08155 (QA442_08155) - 1581672..1582196 (+) 525 WP_095432345.1 hypothetical protein -
  QA442_RS08160 (QA442_08160) - 1582208..1582399 (+) 192 WP_003225893.1 hypothetical protein -
  QA442_RS08165 (QA442_08165) - 1582421..1582552 (+) 132 WP_014664797.1 DUF3918 family protein -
  QA442_RS08170 (QA442_08170) - 1582587..1582825 (-) 239 Protein_1572 amino acid ABC transporter permease -
  QA442_RS08175 (QA442_08175) - 1582972..1584033 (+) 1062 WP_040082305.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89141.69 Da        Isoelectric Point: 4.9548

>NTDB_id=814896 QA442_RS08150 WP_040082303.1 1579219..1581615(+) (recD2) [Bacillus stercoris strain Mal05]
MQQHPDQLKLEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGGRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAKEDQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFSHTEDEPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSVQVEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=814896 QA442_RS08150 WP_040082303.1 1579219..1581615(+) (recD2) [Bacillus stercoris strain Mal05]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAAGGGACAGTTAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTAACAGAGACCTCCGAAGCCATAGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACACACCCGAAATTCGGGCTC
CAATTTCAAGCGGAGCATTTTAAAAAAGAGATACCGACGACTAAGGAAGGCATAATACAATATTTATCGAGTGACTTATT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCCATTAACAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCGAGGCTGTCAAAAAAGAAAGCAGACACGCTGGCAGGTGCCTTGCAGCGGCATCAGGGG
CTGGAGCAAATCATGATTTCCCTGAACCAGTTCGGCTTTGGCCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
CGAGACGCTTGAAAAGATTCAAGAAAATCCTTATCAGCTTGTGAAGGACGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AGCTGGGCGGCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCGATTCTGTACACGCTTGAAACGACT
TGTCTGTCAGAGGGGCACACGTACATAGAAACGGAGCAGCTGATCATCGATACCCAATCACTGTTAAACCAGTCAGCAAA
GGAAGATCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCTCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGACGCTGTTATTTTCCATCGTTGTTTTACGCTGAACAAAATGTTGCTAAGCGAGTGAAACATATCGCAAGCCAAACT
GAATATGATGACCAGTTTCCCGAATCAGAATTTCTGCTCGCTTTGGGGGAATTGGAAGAACGGATGAACGTTCAGTATGC
CCCCAGCCAGAAAGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACAGGCGGCCCGGGAACAGGGAAAA
CGACGGTTATCAGAGGGATTGTCGAGCTCTACGGAGAGCTTCACGGTGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGATTGTTTTGGCCGCTCCGACAGGGAGAGCAGCAAAACGAATGAGTGAATCAACGGGACTTCCTGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTTCCCATACAGAGGATGAGCCGATTGAAGGGAAGCTGT
TAATAATTGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCATCTATTCAAGGCGATCCCTGATCATATCCAAATC
ATCATTGTCGGAGACGAAGACCAGCTGCCTTCTGTAGGTCCGGGCCAAGTGCTGAGAGACCTACTGGCATCCCAGGTGAT
TCCCACGGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTCGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACAAAGGACCGTTCCTTTATTCGCTGCGGCGGGTCGCAAATTAAAGAAGTT
GTTGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTCCTCGCTCCGATGTACAGAGG
AAAAGCCGGCATCAATGAGTTGAATGTGATGCTGCAGGATATTTTAAATCCTCCGAAAGAAAAACGGAGAGAATTGAAGT
TCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGCCGTCGTTTCTTTTGATGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTTAAAAATAATGATGCAACTGTCAG
ACAGACCTCCTTAAAAAACAGGCTGTCCGTACAAGTTGAGGAAATGGATGCCGAGCTTGAGGCTCTCCAAAAAGAGCTCC
CATTCAGCGTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTTGACTTTATGAAAGAAGAACAGTTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.996

99.875

0.989