Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QA442_RS08075 Genome accession   NZ_CP121861
Coordinates   1562122..1564482 (+) Length   786 a.a.
NCBI ID   WP_095432350.1    Uniprot ID   -
Organism   Bacillus stercoris strain Mal05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1557122..1569482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA442_RS08055 (QA442_08055) comN 1558454..1558750 (+) 297 WP_014664815.1 post-transcriptional regulator ComN -
  QA442_RS08060 (QA442_08060) secDF 1558789..1561002 (+) 2214 WP_095432353.1 protein translocase subunit SecDF -
  QA442_RS08065 (QA442_08065) - 1561160..1561657 (+) 498 WP_095432352.1 cation:proton antiporter regulatory subunit -
  QA442_RS08070 (QA442_08070) - 1561732..1562055 (+) 324 WP_095432351.1 lipopolysaccharide assembly LapA domain-containing protein -
  QA442_RS08075 (QA442_08075) recJ 1562122..1564482 (+) 2361 WP_095432350.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QA442_RS08080 (QA442_08080) - 1564488..1565000 (+) 513 WP_014477521.1 adenine phosphoribosyltransferase -
  QA442_RS08085 (QA442_08085) relA 1565169..1567373 (+) 2205 WP_003229747.1 GTP diphosphokinase -
  QA442_RS08090 (QA442_08090) dtd 1567386..1567826 (+) 441 WP_071581519.1 D-aminoacyl-tRNA deacylase -
  QA442_RS08095 (QA442_08095) - 1567853..1569409 (-) 1557 WP_095432349.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87983.58 Da        Isoelectric Point: 5.0461

>NTDB_id=814895 QA442_RS08075 WP_095432350.1 1562122..1564482(+) (recJ) [Bacillus stercoris strain Mal05]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVERQGLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLKAEDVPNLRSRLNEIADNTLTEEDFVPVQEVDLVCSVEDITVESITEMNMLSPFGMLN
PKPHVLVENVVLEDVRKIGANKTHVKMTIKNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEDTVSALPSAKRAIVSFKEDSTTLLQTEGLRQEVQVISSEDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELAKHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGAKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=814895 QA442_RS08075 WP_095432350.1 1562122..1564482(+) (recJ) [Bacillus stercoris strain Mal05]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCTAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTTGAAATGAAAGGCATGAAAGAAGCGGCAGATCGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGGGTTACCAGTACGTCAGTGATGCTTCACACGCTGCAAAAACT
ATCGGCTCAAGTTGATTTTTATATACCTGACCGTTTTAAAGAAGGATATGGACCTAATGAACAGGCGTTTCGTTCGATTA
AAGAACGGGGCTTCTCTTTGATCATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTGGCAAAAGAACTC
GGACTGGATGTCATCATTACAGATCATCATGAACCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACTTACCCGTTTAAAGAGCTTGCAGGGGTCGGAGTCGCGTTTAAGCTGGCCCATGCTTTATTGGGTGAAC
TTCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACCATTGCTGACCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTCCGGCGGACAAACCGGCTCGGCTTAAAAGAACTGATTAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACTGTCGGATTTCAGCTCGCTCCAAGGCTGAATGCCGTCGGAAGAATCGAACAGGCGGACC
CAGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCAGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACGGCAAGGGCTCGATCAAACTGCAATTGT
CGTGGCAAAAGCCGGATGGAACCCGGGAGTCGTCGGGATTGTGGCCTCAAAGCTTGTGGACCGTTTCTATCGCCCTGCTA
TTGTGCTTGGCATTGATGAAGAAAAGGGGATCGCTAAAGGTTCGGCCCGAAGCATCAGGGGGTTTAATTTATTTGAGAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCAGCGGGGATGACGCTCAAAGCCGAGGATGT
GCCGAATTTGCGAAGCAGGCTGAATGAAATAGCGGACAATACGCTTACGGAGGAGGATTTTGTTCCTGTACAGGAAGTAG
ACCTTGTCTGCAGCGTCGAGGACATTACAGTTGAAAGCATCACAGAAATGAACATGCTTTCTCCTTTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGTAGTACTGGAAGATGTCCGCAAGATAGGGGCAAATAAAACTCATGTCAAAAT
GACGATCAAAAATGAGTCGTCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTCGAAGAAGGCATCGTACCGGGAT
CAAGAATTTCCATTGTCGGTGAGATGTCAATCAACGAATGGAACAATCGGAAAAAACCGCAGCTTATGATAAAGGACGCC
GCTGTTTCTGAATGGCAGCTATTTGATTTAAGGGGAAAACGGACGTGGGAAGATACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAAACTGAAGGCCTTCGTCAAGAAGTGCAGGTCATCA
GCTCAGAAGATCAAGCAAAGGCGTTTGACCTCGATGGTGCATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGAAAGGCGCCTGAGCGGATATATTTTATTTTTCTCAATCATGAGGACCACTTTTTATCGAC
TTTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGATGTGAAAAAACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTTGTGAGCGGAGCAAAGAAACGTGACTTAACAGACTCACAAACATATCAGGCGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

98.219

100

0.982