Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QBJ73_RS05390 Genome accession   NZ_CP121776
Coordinates   1096080..1096736 (-) Length   218 a.a.
NCBI ID   WP_005401354.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AYTCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091080..1101736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS05360 (QBJ73_05365) aroK 1091142..1091675 (-) 534 WP_005401350.1 shikimate kinase AroK -
  QBJ73_RS05365 (QBJ73_05370) - 1091713..1092990 (-) 1278 Protein_1033 type IV pilus secretin PilQ -
  QBJ73_RS05370 (QBJ73_05375) - 1093047..1093997 (+) 951 WP_006582413.1 IS481 family transposase -
  QBJ73_RS05375 (QBJ73_05380) - 1094008..1094754 (-) 747 Protein_1035 AMIN domain-containing protein -
  QBJ73_RS05380 (QBJ73_05385) pilP 1094819..1095346 (-) 528 WP_005401352.1 pilus assembly protein PilP Machinery gene
  QBJ73_RS05385 (QBJ73_05390) - 1095346..1096083 (-) 738 Protein_1037 type 4a pilus biogenesis protein PilO -
  QBJ73_RS05390 (QBJ73_05395) pilN 1096080..1096736 (-) 657 WP_005401354.1 PilN domain-containing protein Machinery gene
  QBJ73_RS05395 (QBJ73_05400) - 1096736..1097793 (-) 1058 Protein_1039 pilus assembly protein PilM -
  QBJ73_RS05400 (QBJ73_05405) ponA 1097959..1100487 (+) 2529 WP_279699920.1 penicillin-binding protein PBP1a -
  QBJ73_RS05405 (QBJ73_05410) - 1100519..1101325 (-) 807 WP_058951626.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24226.65 Da        Isoelectric Point: 5.1439

>NTDB_id=814161 QBJ73_RS05390 WP_005401354.1 1096080..1096736(-) (pilN) [Acinetobacter johnsonii strain AYTCM]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPDATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=814161 QBJ73_RS05390 WP_005401354.1 1096080..1096736(-) (pilN) [Acinetobacter johnsonii strain AYTCM]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCGTGGTTTTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTAGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCATTGGAAGGTTTGCAAGAACAGCGAAATGCG
ATTGTTGAACGGATGAAGTTGATCCAAGGTTTGCAAGGTCAACGTCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTTACACCGAGTAATATGTACATTACTAAGTTTGTGCGTACAGGTGATAAATTTACCATTGAAGGTAAAGCGGAAAGCC
CGAATACAGTTGCGGAATTCTTACGTAATCTCGAAGCATCTGCGTGGTATCGCAATGCCTTTATGAATTCATTCTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCTATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTCACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTGATGCGACTACACCTGAAGCCGCAAGCACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.856

95.872

0.67
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665