Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8474_RS08245 Genome accession   NZ_AP026914
Coordinates   1649052..1650323 (+) Length   423 a.a.
NCBI ID   WP_081573864.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644052..1655323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS08210 (PC0003_16360) - 1645117..1645545 (-) 429 WP_000418158.1 NUDIX hydrolase -
  R8474_RS08215 (PC0003_16370) - 1645526..1646614 (-) 1089 WP_000719710.1 site-2 protease family protein -
  R8474_RS08220 (PC0003_16380) - 1646633..1647103 (-) 471 WP_000257093.1 DUF3013 family protein -
  R8474_RS08225 (PC0003_16390) - 1647394..1647846 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8474_RS08230 (PC0003_16400) - 1647883..1648062 (-) 180 WP_001132286.1 type II toxin-antitoxin system HicA family toxin -
  R8474_RS08235 (PC0003_16410) - 1648199..1648378 (-) 180 WP_001048906.1 hypothetical protein -
  R8474_RS08240 (PC0003_16420) - 1648543..1648782 (-) 240 WP_000818079.1 hypothetical protein -
  R8474_RS08245 (PC0003_16430) rarA 1649052..1650323 (+) 1272 WP_081573864.1 replication-associated recombination protein A Machinery gene
  R8474_RS08255 (PC0003_16440) - 1650870..1652189 (-) 1320 WP_000608887.1 glycoside hydrolase family 32 protein -
  R8474_RS08260 (PC0003_16450) - 1652199..1653044 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  R8474_RS08265 (PC0003_16460) - 1653046..1653948 (-) 903 WP_000032532.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47039.48 Da        Isoelectric Point: 6.0608

>NTDB_id=81389 R8474_RS08245 WP_081573864.1 1649052..1650323(+) (rarA) [Streptococcus pneumoniae strain PZ900700003]
MPDNLALRMRPKTIDQVIGQEHLVGHGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
ITLSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=81389 R8474_RS08245 WP_081573864.1 1649052..1650323(+) (rarA) [Streptococcus pneumoniae strain PZ900700003]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACATGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAACTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.279

99.054

0.567

Multiple sequence alignment