Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P9989_RS13185 Genome accession   NZ_CP121671
Coordinates   2498096..2500420 (-) Length   774 a.a.
NCBI ID   WP_283075359.1    Uniprot ID   -
Organism   Halobacillus naozhouensis strain KCTC 13234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2493096..2505420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9989_RS13170 (P9989_13165) - 2495970..2497037 (-) 1068 WP_283075357.1 AI-2E family transporter -
  P9989_RS13175 (P9989_13170) - 2497037..2497213 (-) 177 WP_176142538.1 hypothetical protein -
  P9989_RS13180 (P9989_13175) - 2497263..2498081 (-) 819 WP_283075358.1 TIM barrel protein -
  P9989_RS13185 (P9989_13180) recD2 2498096..2500420 (-) 2325 WP_283075359.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P9989_RS13190 (P9989_13185) - 2500438..2501100 (-) 663 WP_283075360.1 tetratricopeptide repeat protein -
  P9989_RS13195 (P9989_13190) mnmA 2501162..2502274 (-) 1113 WP_283075361.1 tRNA 2-thiouridine(34) synthase MnmA -
  P9989_RS13200 (P9989_13195) - 2502289..2503428 (-) 1140 WP_283075362.1 cysteine desulfurase family protein -
  P9989_RS13205 (P9989_13200) - 2503449..2503868 (-) 420 WP_079530371.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 88330.25 Da        Isoelectric Point: 5.0437

>NTDB_id=813837 P9989_RS13185 WP_283075359.1 2498096..2500420(-) (recD2) [Halobacillus naozhouensis strain KCTC 13234]
MAERTLFSETSEERPYIKGELGRMIFHKESEHFSIASIIVQETNEDFDERSVVIKGHFPPLEDGETYIFHGVFLEHKKFG
RQYQVEFYQRVLPETKDGLVVYLSSDLFHGIGKKTAERVVDQLGEQAISAILEDPDVLKKVPKLPKEKRETLYNTLKEHQ
GFEHVMIHLNQYGFGLKLSQKIYEAFKDQTLAIIEEDPYQLVFKVDGFGFHRADEMAKVQKLPLDHPTRLRAACLYILQQ
SLSAGHVYLPTASCLSQVENLLNSSSGEKSITFDQLSEQVIRLAEDRYVFIEEDRVYLPSLFHAENGFCHQLERIMEQEL
ETEHTQAELLKIVGDMEEEESISYGEDQFAAIEKALQSKVMILTGGPGTGKTTVIKGIIKAYSTLYDLSTDKGDYDQGEP
FPFILAAPTGRAAKRMTESTGLPASTIHRLLVWDGHDSFDKNQNNQLEGKLLIIDEFSMVDMWLANQLFRAIPSDMQVLI
VGDEDQLPSVGPGQVLADLLASNQLPSVQLSEVYRQKEGSKIIQLAHEIKNDQCTRQSLTKEHDFNFINAREHQLKDLVT
NIVKKALDKGIELREVQVLAPMYRTDVGIHKLNEEIQRVVNPKSKQKRDLTFKDLTYRKGDKVIQLVNQPEDGVYNGDIG
EIAAIFRAEENVDQVEQVVVDYDGKEVVYPKKNLNNIMHAYCTSIHKSQGSEFSIVILPVVRSYRRMLRKNLLYTAITRS
KHSLIICGDTNAFLEGVQTTDTNLRYTHLVEKLQNETVNELNEEEEELSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=813837 P9989_RS13185 WP_283075359.1 2498096..2500420(-) (recD2) [Halobacillus naozhouensis strain KCTC 13234]
ATGGCTGAACGAACGCTATTTTCTGAGACAAGTGAAGAACGCCCATATATAAAAGGAGAACTGGGCCGGATGATTTTTCA
TAAGGAGTCGGAGCACTTTTCAATTGCTTCCATAATCGTGCAGGAAACGAACGAAGACTTCGATGAAAGAAGCGTAGTGA
TTAAAGGTCATTTTCCTCCTCTCGAAGATGGGGAAACTTATATTTTTCATGGTGTTTTCCTGGAGCATAAAAAGTTCGGA
CGTCAATACCAGGTCGAATTCTATCAACGGGTACTTCCGGAAACTAAGGATGGATTGGTTGTTTATTTATCGAGCGATCT
TTTTCACGGCATTGGCAAAAAAACGGCCGAACGGGTGGTTGATCAATTAGGTGAGCAAGCTATTTCCGCAATTTTGGAAG
ATCCAGACGTTTTGAAAAAGGTTCCCAAACTTCCGAAAGAAAAACGTGAAACGCTTTACAATACGTTAAAGGAACATCAA
GGATTTGAACATGTAATGATCCACCTGAATCAGTATGGCTTCGGTCTTAAGCTTTCACAGAAGATTTATGAAGCATTTAA
AGATCAAACACTTGCCATTATTGAGGAGGATCCTTATCAACTGGTGTTCAAGGTGGATGGCTTTGGCTTTCACCGTGCGG
ATGAAATGGCAAAAGTCCAGAAATTACCGCTTGATCATCCAACAAGACTGCGAGCAGCATGTTTATATATCTTGCAACAG
AGCCTATCGGCTGGCCATGTATATTTGCCGACAGCGTCCTGTTTATCTCAAGTGGAAAACCTTCTTAATAGCAGCAGTGG
GGAGAAATCGATTACTTTCGATCAATTATCCGAACAAGTTATTCGCCTGGCAGAAGACCGGTATGTCTTTATCGAAGAAG
ACCGTGTTTACTTGCCATCCCTTTTTCATGCAGAAAATGGCTTCTGCCACCAGCTTGAAAGAATCATGGAGCAAGAACTC
GAAACGGAGCATACTCAGGCAGAGCTGTTAAAGATTGTTGGCGATATGGAAGAAGAAGAGTCGATTAGTTATGGTGAAGA
CCAGTTTGCGGCAATCGAGAAAGCACTGCAATCGAAAGTTATGATTCTGACAGGAGGTCCGGGGACTGGTAAGACCACAG
TGATTAAAGGCATTATTAAGGCATATTCAACACTTTATGACCTGTCTACCGACAAAGGTGATTACGATCAGGGAGAGCCT
TTTCCCTTTATACTTGCTGCCCCGACCGGTCGTGCCGCCAAGCGTATGACAGAGTCAACCGGCCTGCCAGCCAGCACGAT
CCATCGATTGCTCGTCTGGGATGGGCATGACAGTTTTGATAAAAATCAAAACAACCAACTTGAAGGGAAGCTATTAATTA
TTGATGAATTCTCGATGGTTGATATGTGGCTTGCCAACCAATTGTTCCGCGCCATTCCCTCTGATATGCAAGTCTTGATC
GTCGGGGATGAGGACCAGCTGCCATCTGTCGGCCCAGGTCAAGTATTGGCAGATTTATTAGCGTCCAACCAGCTTCCTTC
TGTTCAACTATCAGAGGTGTACAGACAGAAAGAAGGATCAAAAATAATTCAGCTTGCCCACGAAATTAAAAATGACCAGT
GTACCAGACAGTCGCTGACGAAAGAGCATGATTTTAATTTTATAAATGCGCGGGAGCATCAGCTGAAAGATTTGGTTACG
AATATTGTCAAGAAGGCCTTGGATAAAGGAATAGAATTACGAGAGGTGCAAGTCCTGGCCCCGATGTATCGAACAGATGT
CGGCATTCATAAATTGAATGAAGAGATCCAGCGTGTTGTAAATCCAAAAAGTAAGCAAAAGCGTGATCTGACGTTTAAAG
ATCTGACTTACCGGAAAGGCGACAAGGTGATCCAGCTTGTCAATCAGCCGGAAGATGGTGTTTATAATGGCGATATAGGA
GAAATTGCAGCTATTTTCCGAGCAGAAGAAAACGTGGATCAAGTGGAGCAGGTCGTCGTCGATTATGATGGTAAAGAAGT
CGTCTATCCAAAAAAAAACCTTAATAACATCATGCATGCCTATTGCACGTCCATTCATAAATCGCAGGGAAGCGAATTTT
CTATTGTGATTTTGCCCGTTGTACGCAGCTATCGCAGAATGCTCAGGAAAAATCTGTTGTACACGGCAATAACGAGATCG
AAGCATTCTCTTATTATATGCGGGGACACAAATGCTTTCCTCGAAGGTGTGCAGACGACTGATACAAATTTAAGGTATAC
TCACTTAGTAGAAAAACTGCAGAACGAAACGGTTAATGAGTTGAATGAGGAAGAAGAGGAACTTTCCCCTTATGATTTTA
TGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

AAA domain (AAA_30)

(344-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.787

100

0.494