Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MTS17_RS15105 Genome accession   NZ_CP121625
Coordinates   3104065..3104706 (+) Length   213 a.a.
NCBI ID   WP_283059942.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JAB144     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3099065..3109706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS17_RS15085 (MTS17_15085) - 3099112..3099444 (+) 333 WP_000169594.1 hypothetical protein -
  MTS17_RS15090 (MTS17_15090) - 3099447..3100271 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  MTS17_RS15095 (MTS17_15095) ponA 3100289..3102844 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  MTS17_RS15100 (MTS17_15100) pilM 3103007..3104065 (+) 1059 WP_283059940.1 pilus assembly protein PilM Machinery gene
  MTS17_RS15105 (MTS17_15105) pilN 3104065..3104706 (+) 642 WP_283059942.1 PilN domain-containing protein Machinery gene
  MTS17_RS15110 (MTS17_15110) pilO 3104703..3105443 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  MTS17_RS15115 (MTS17_15115) pilP 3105454..3105981 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  MTS17_RS15120 (MTS17_15120) pilQ 3106049..3108214 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  MTS17_RS15125 (MTS17_15125) aroK 3108226..3108795 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.40 Da        Isoelectric Point: 5.8666

>NTDB_id=813522 MTS17_RS15105 WP_283059942.1 3104065..3104706(+) (pilN) [Acinetobacter baumannii strain JAB144]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEKRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=813522 MTS17_RS15105 WP_283059942.1 3104065..3104706(+) (pilN) [Acinetobacter baumannii strain JAB144]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAAAAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.429

98.592

0.704