Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8474_RS03955 Genome accession   NZ_AP026914
Coordinates   771201..772949 (+) Length   582 a.a.
NCBI ID   WP_000828850.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 766201..777949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS03935 (PC0003_07790) thrB 767269..768138 (+) 870 WP_000692438.1 homoserine kinase -
  R8474_RS03940 (PC0003_07800) - 768214..768450 (+) 237 WP_001820728.1 hypothetical protein -
  R8474_RS03945 (PC0003_07810) msrB 768479..769417 (+) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8474_RS03950 (PC0003_07820) - 769475..771199 (+) 1725 WP_317642010.1 ABC transporter ATP-binding protein -
  R8474_RS03955 (PC0003_07830) rcrQ 771201..772949 (+) 1749 WP_000828850.1 ABC transporter ATP-binding protein Regulator
  R8474_RS03960 (PC0003_07840) - 773296..774555 (+) 1260 WP_001820727.1 TRZ/ATZ family protein -
  R8474_RS03965 (PC0003_07850) rplJ 774805..775305 (+) 501 WP_001287278.1 50S ribosomal protein L10 -
  R8474_RS03970 (PC0003_07860) rplL 775381..775749 (+) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  R8474_RS03975 (PC0003_07870) - 775937..776107 (+) 171 WP_001168348.1 hypothetical protein -
  R8474_RS03980 (PC0003_07880) - 776107..776358 (+) 252 Protein_786 replication initiator protein A -
  R8474_RS03985 (PC0003_07890) - 776354..776692 (+) 339 Protein_787 hypothetical protein -
  R8474_RS03990 (PC0003_07900) - 776685..777065 (+) 381 WP_000566531.1 arsenate reductase family protein -
  R8474_RS03995 - 777078..777311 (+) 234 Protein_789 transcriptional regulator -
  R8474_RS04000 (PC0003_07920) - 777314..777901 (+) 588 WP_000821279.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64901.42 Da        Isoelectric Point: 7.3120

>NTDB_id=81349 R8474_RS03955 WP_000828850.1 771201..772949(+) (rcrQ) [Streptococcus pneumoniae strain PZ900700003]
MKRQTVNQTLKRLVVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKELSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=81349 R8474_RS03955 WP_000828850.1 771201..772949(+) (rcrQ) [Streptococcus pneumoniae strain PZ900700003]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGTCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGATATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGGGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGAGTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.367

96.564

0.361

Multiple sequence alignment