Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RWV42_RS00280 Genome accession   NZ_CP136173
Coordinates   60837..62102 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain ABO21-A049     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55837..67102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWV42_RS00250 (RWV42_00250) mutY 56006..57040 (-) 1035 WP_001113863.1 A/G-specific adenine glycosylase -
  RWV42_RS00255 (RWV42_00255) - 57181..57543 (-) 363 WP_000130110.1 HIT family protein -
  RWV42_RS00260 (RWV42_00260) - 57729..58466 (-) 738 WP_114189515.1 dienelactone hydrolase family protein -
  RWV42_RS00265 (RWV42_00265) - 58638..58796 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RWV42_RS00270 (RWV42_00270) - 58991..59449 (+) 459 WP_002027558.1 YcgN family cysteine cluster protein -
  RWV42_RS00275 (RWV42_00275) - 59559..60731 (+) 1173 WP_000986273.1 PQQ-dependent sugar dehydrogenase -
  RWV42_RS00280 (RWV42_00280) rarA 60837..62102 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  RWV42_RS00285 (RWV42_00285) - 62117..62956 (-) 840 WP_000349494.1 formate/nitrite transporter family protein -
  RWV42_RS00290 (RWV42_00290) - 63241..63444 (-) 204 WP_000418559.1 hypothetical protein -
  RWV42_RS00295 (RWV42_00295) purC 63637..64356 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RWV42_RS00300 (RWV42_00300) - 64393..64995 (-) 603 WP_001177091.1 hypothetical protein -
  RWV42_RS00305 (RWV42_00305) dapA 65011..65904 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RWV42_RS00310 (RWV42_00310) pncA 66234..66878 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=813430 RWV42_RS00280 WP_001285409.1 60837..62102(+) (rarA) [Acinetobacter baumannii strain ABO21-A049]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=813430 RWV42_RS00280 WP_001285409.1 60837..62102(+) (rarA) [Acinetobacter baumannii strain ABO21-A049]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCTCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGATTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTTTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387