Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   KI220_RS13425 Genome accession   NZ_AP023088
Coordinates   2693535..2694314 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain RSC-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2688535..2699314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI220_RS13405 (RSC1_02690) trmFO 2689232..2690536 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  KI220_RS13410 (RSC1_02691) xerC 2690603..2691517 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  KI220_RS13415 (RSC1_02692) hslV 2691531..2692076 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  KI220_RS13420 (RSC1_02693) hslU 2692084..2693496 (+) 1413 WP_257007241.1 HslU--HslV peptidase ATPase subunit -
  KI220_RS13425 (RSC1_02694) codY 2693535..2694314 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  KI220_RS13430 (RSC1_02696) flgB 2694666..2695055 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  KI220_RS13435 (RSC1_02697) flgC 2695055..2695507 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  KI220_RS13440 (RSC1_02698) fliE 2695521..2695838 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  KI220_RS13445 (RSC1_02699) fliF 2695889..2697490 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  KI220_RS13450 (RSC1_02700) fliG 2697504..2698520 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  KI220_RS13455 (RSC1_02701) fliH 2698504..2699271 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=81305 KI220_RS13425 WP_003181756.1 2693535..2694314(+) (codY) [Bacillus paralicheniformis strain RSC-1]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=81305 KI220_RS13425 WP_003181756.1 2693535..2694314(+) (codY) [Bacillus paralicheniformis strain RSC-1]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment