Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RWU34_RS00280 Genome accession   NZ_CP136165
Coordinates   60635..61900 (+) Length   421 a.a.
NCBI ID   WP_001285411.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55635..66900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU34_RS00250 (RWU34_00250) mutY 55804..56838 (-) 1035 WP_001113857.1 A/G-specific adenine glycosylase -
  RWU34_RS00255 (RWU34_00255) - 56979..57341 (-) 363 WP_000130110.1 HIT family protein -
  RWU34_RS00260 (RWU34_00260) - 57527..58264 (-) 738 WP_000100768.1 dienelactone hydrolase family protein -
  RWU34_RS00265 (RWU34_00265) - 58436..58594 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  RWU34_RS00270 (RWU34_00270) - 58789..59247 (+) 459 WP_000102816.1 YcgN family cysteine cluster protein -
  RWU34_RS00275 (RWU34_00275) - 59360..60529 (+) 1170 WP_012392008.1 PQQ-dependent sugar dehydrogenase -
  RWU34_RS00280 (RWU34_00280) rarA 60635..61900 (+) 1266 WP_001285411.1 replication-associated recombination protein A Machinery gene
  RWU34_RS00285 (RWU34_00285) - 61916..62755 (-) 840 WP_000349499.1 formate/nitrite transporter family protein -
  RWU34_RS00290 (RWU34_00290) - 63037..63240 (-) 204 WP_000418560.1 hypothetical protein -
  RWU34_RS00295 (RWU34_00295) purC 63433..64152 (-) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  RWU34_RS00300 (RWU34_00300) - 64190..64792 (-) 603 WP_001177091.1 hypothetical protein -
  RWU34_RS00305 (RWU34_00305) dapA 64808..65701 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  RWU34_RS00310 (RWU34_00310) pncA 66031..66675 (+) 645 WP_000783436.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46960.62 Da        Isoelectric Point: 5.8354

>NTDB_id=812910 RWU34_RS00280 WP_001285411.1 60635..61900(+) (rarA) [Acinetobacter baumannii strain ABO21-A064]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDRFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=812910 RWU34_RS00280 WP_001285411.1 60635..61900(+) (rarA) [Acinetobacter baumannii strain ABO21-A064]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAGATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCAGATGCGGCTTTGTACTGGATGGCACGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41

95.012

0.39