Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QA712_RS06380 Genome accession   NZ_CP121539
Coordinates   1165991..1166929 (-) Length   312 a.a.
NCBI ID   WP_332529465.1    Uniprot ID   -
Organism   Lactococcus lactis strain MA5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1160991..1171929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA712_RS06355 (QA712_06360) frr 1161107..1161664 (-) 558 WP_004254618.1 ribosome recycling factor -
  QA712_RS06360 (QA712_06365) pyrH 1161877..1162593 (-) 717 WP_004254608.1 UMP kinase -
  QA712_RS06365 (QA712_06370) - 1162678..1163130 (-) 453 WP_038602950.1 hypothetical protein -
  QA712_RS06370 (QA712_06375) - 1163264..1164451 (-) 1188 WP_015427114.1 acetate kinase -
  QA712_RS06375 (QA712_06380) - 1164608..1165795 (-) 1188 WP_047206881.1 acetate kinase -
  QA712_RS06380 (QA712_06385) comYH 1165991..1166929 (-) 939 WP_332529465.1 class I SAM-dependent methyltransferase Machinery gene
  QA712_RS06385 (QA712_06390) - 1167017..1167268 (-) 252 WP_004254583.1 DUF3165 family protein -
  QA712_RS06390 (QA712_06395) typA 1167369..1169201 (-) 1833 WP_047206887.1 translational GTPase TypA -
  QA712_RS06395 (QA712_06400) - 1169389..1169847 (-) 459 WP_259745718.1 hypothetical protein -
  QA712_RS06400 (QA712_06405) - 1170004..1170630 (-) 627 WP_047206883.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34812.97 Da        Isoelectric Point: 4.3717

>NTDB_id=812863 QA712_RS06380 WP_332529465.1 1165991..1166929(-) (comYH) [Lactococcus lactis strain MA5]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYIGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=812863 QA712_RS06380 WP_332529465.1 1165991..1166929(-) (comYH) [Lactococcus lactis strain MA5]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATATAGGCTTTGAAGTTGATGATTTACTTTTAGATCTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAAGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

49.201

100

0.494
  comYH Streptococcus mutans UA159

48.562

100

0.487