Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RUW23_RS10180 Genome accession   NZ_CP136014
Coordinates   2145045..2145770 (+) Length   241 a.a.
NCBI ID   WP_031756987.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain R18-20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140045..2150770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUW23_RS10150 (RUW23_10150) - 2140165..2141043 (-) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -
  RUW23_RS10155 (RUW23_10155) - 2141045..2142421 (-) 1377 WP_003103320.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RUW23_RS10160 (RUW23_10160) - 2142432..2142680 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RUW23_RS10165 (RUW23_10165) - 2142757..2143515 (-) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  RUW23_RS10170 (RUW23_10170) - 2143633..2144559 (+) 927 WP_074231244.1 LysR family transcriptional regulator -
  RUW23_RS10175 (RUW23_10175) - 2144613..2144906 (+) 294 WP_003113255.1 hypothetical protein -
  RUW23_RS10180 (RUW23_10180) comF 2145045..2145770 (+) 726 WP_031756987.1 ComF family protein Machinery gene
  RUW23_RS10185 (RUW23_10185) - 2145812..2146132 (+) 321 WP_003117926.1 YfiM family lipoprotein -
  RUW23_RS10190 (RUW23_10190) - 2146200..2146958 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  RUW23_RS10195 (RUW23_10195) - 2147020..2147994 (+) 975 WP_031756990.1 serine/threonine protein kinase -
  RUW23_RS10200 (RUW23_10200) rarD 2148197..2149093 (+) 897 WP_003103301.1 EamA family transporter RarD -
  RUW23_RS10205 (RUW23_10205) - 2149783..2150298 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27104.64 Da        Isoelectric Point: 11.2212

>NTDB_id=812642 RUW23_RS10180 WP_031756987.1 2145045..2145770(+) (comF) [Pseudomonas aeruginosa strain R18-20]
MSFLLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=812642 RUW23_RS10180 WP_031756987.1 2145045..2145770(+) (comF) [Pseudomonas aeruginosa strain R18-20]
ATGTCGTTCCTGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCACTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382