Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RS960_RS07885 Genome accession   NZ_CP135966
Coordinates   1617423..1618697 (+) Length   424 a.a.
NCBI ID   WP_262607533.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612423..1623697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS07855 (RS960_07855) mnmA 1612625..1613743 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  RS960_RS07860 (RS960_07860) - 1613744..1614886 (-) 1143 WP_317528608.1 cysteine desulfurase family protein -
  RS960_RS07865 (RS960_07865) - 1615198..1616211 (+) 1014 WP_115211263.1 LLM class flavin-dependent oxidoreductase -
  RS960_RS07870 (RS960_07870) - 1616448..1616594 (-) 147 WP_000009238.1 SAS049 family protein -
  RS960_RS07875 (RS960_07875) - 1616634..1616816 (-) 183 WP_000752912.1 CsbD family protein -
  RS960_RS07880 (RS960_07880) cymR 1616916..1617338 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  RS960_RS07885 (RS960_07885) rarA 1617423..1618697 (+) 1275 WP_262607533.1 replication-associated recombination protein A Machinery gene
  RS960_RS07890 (RS960_07890) - 1618858..1619631 (-) 774 WP_262607534.1 tRNA threonylcarbamoyladenosine dehydratase -
  RS960_RS07895 (RS960_07895) - 1619631..1619759 (-) 129 WP_041204300.1 hypothetical protein -
  RS960_RS07905 (RS960_07905) aspS 1620092..1621858 (-) 1767 WP_072491717.1 aspartate--tRNA ligase -
  RS960_RS07910 (RS960_07910) hisS 1621874..1623136 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47276.85 Da        Isoelectric Point: 8.3588

>NTDB_id=812588 RS960_RS07885 WP_262607533.1 1617423..1618697(+) (rarA) [Staphylococcus aureus strain ST5477]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSSQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGHRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=812588 RS960_RS07885 WP_262607533.1 1617423..1618697(+) (rarA) [Staphylococcus aureus strain ST5477]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTAGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAGCAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAGGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCATAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

68.81

99.057

0.682