Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RTE58_RS01200 Genome accession   NZ_CP135959
Coordinates   262379..263143 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain MS1266     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 257379..268143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE58_RS01175 (RTE58_01175) yhhJ 259221..260345 (+) 1125 WP_001314210.1 ABC transporter permease -
  RTE58_RS01180 (RTE58_01180) - 260418..260693 (+) 276 WP_001260301.1 type II toxin-antitoxin system HicA family toxin -
  RTE58_RS01185 (RTE58_01185) - 260690..261049 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  RTE58_RS01190 (RTE58_01190) nikR 261169..261570 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  RTE58_RS01195 (RTE58_01195) nikE 261576..262382 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  RTE58_RS01200 (RTE58_01200) amiE 262379..263143 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  RTE58_RS01205 (RTE58_01205) nikC 263143..263976 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  RTE58_RS01210 (RTE58_01210) nikB 263973..264917 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  RTE58_RS01215 (RTE58_01215) nikA 264917..266491 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  RTE58_RS01220 (RTE58_01220) acpT 266602..267189 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=812450 RTE58_RS01200 WP_001136232.1 262379..263143(-) (amiE) [Escherichia coli strain MS1266]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=812450 RTE58_RS01200 WP_001136232.1 262379..263143(-) (amiE) [Escherichia coli strain MS1266]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGAATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398