Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RS156_RS17475 Genome accession   NZ_CP135722
Coordinates   3633948..3634415 (-) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1223     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3628948..3639415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS156_RS17450 (RS156_17450) rpsG 3629089..3629559 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  RS156_RS17455 (RS156_17455) fusA 3629656..3631770 (+) 2115 WP_000124703.1 elongation factor G -
  RS156_RS17460 (RS156_17460) tuf 3631841..3633025 (+) 1185 WP_000031783.1 elongation factor Tu -
  RS156_RS17465 (RS156_17465) bfd 3633208..3633402 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  RS156_RS17470 (RS156_17470) bfr 3633475..3633951 (+) 477 WP_000675515.1 bacterioferritin -
  RS156_RS17475 (RS156_17475) pilD 3633948..3634415 (-) 468 WP_000340159.1 prepilin peptidase Machinery gene
  RS156_RS17480 (RS156_17480) rpsJ 3634794..3635105 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  RS156_RS17485 (RS156_17485) rplC 3635138..3635767 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  RS156_RS17490 (RS156_17490) rplD 3635778..3636383 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  RS156_RS17495 (RS156_17495) rplW 3636380..3636682 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  RS156_RS17500 (RS156_17500) rplB 3636700..3637521 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  RS156_RS17505 (RS156_17505) rpsS 3637538..3637816 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  RS156_RS17510 (RS156_17510) rplV 3637831..3638163 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  RS156_RS17515 (RS156_17515) rpsC 3638181..3638882 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  RS156_RS17520 (RS156_17520) rplP 3638895..3639305 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=812336 RS156_RS17475 WP_000340159.1 3633948..3634415(-) (pilD) [Escherichia coli strain TUM1223]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=812336 RS156_RS17475 WP_000340159.1 3633948..3634415(-) (pilD) [Escherichia coli strain TUM1223]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368