Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   P9972_RS15170 Genome accession   NZ_CP121465
Coordinates   3072196..3072840 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain YA215     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067196..3077840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS15135 (P9972_15135) - 3068381..3068812 (+) 432 WP_046560011.1 Na(+)/H(+) antiporter subunit B -
  P9972_RS15140 (P9972_15140) - 3068812..3069153 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  P9972_RS15145 (P9972_15145) - 3069146..3070627 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  P9972_RS15150 (P9972_15150) - 3070633..3071109 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  P9972_RS15155 (P9972_15155) - 3071109..3071393 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  P9972_RS15160 (P9972_15160) mnhG 3071377..3071751 (+) 375 WP_046560012.1 monovalent cation/H(+) antiporter subunit G -
  P9972_RS15165 (P9972_15165) - 3071791..3072174 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  P9972_RS15170 (P9972_15170) comA 3072196..3072840 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  P9972_RS15175 (P9972_15175) comP 3072921..3075224 (-) 2304 WP_207579565.1 histidine kinase Regulator
  P9972_RS15180 (P9972_15180) comX 3075244..3075423 (-) 180 WP_306383677.1 competence pheromone ComX -
  P9972_RS15185 (P9972_15185) comQ 3075377..3076363 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  P9972_RS15190 (P9972_15190) degQ 3076494..3076634 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  P9972_RS15195 (P9972_15195) - 3077100..3077441 (+) 342 WP_046560014.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=812178 P9972_RS15170 WP_003152052.1 3072196..3072840(-) (comA) [Bacillus velezensis strain YA215]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=812178 P9972_RS15170 WP_003152052.1 3072196..3072840(-) (comA) [Bacillus velezensis strain YA215]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864