Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   P9J61_RS16640 Genome accession   NZ_CP121370
Coordinates   3385838..3386479 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3380838..3391479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS16620 (P9J61_16620) aroK 3381754..3382323 (-) 570 WP_000643712.1 shikimate kinase AroK -
  P9J61_RS16625 (P9J61_16625) pilQ 3382335..3384500 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  P9J61_RS16630 (P9J61_16630) pilP 3384563..3385090 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  P9J61_RS16635 (P9J61_16635) pilO 3385101..3385841 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  P9J61_RS16640 (P9J61_16640) pilN 3385838..3386479 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  P9J61_RS16645 (P9J61_16645) pilM 3386479..3387537 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  P9J61_RS16650 (P9J61_16650) ponA 3387698..3390253 (+) 2556 WP_005137336.1 penicillin-binding protein PBP1a -
  P9J61_RS16655 (P9J61_16655) - 3390272..3391096 (-) 825 WP_005122435.1 putative RNA methyltransferase -
  P9J61_RS16660 (P9J61_16660) - 3391099..3391431 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=812012 P9J61_RS16640 WP_000201223.1 3385838..3386479(-) (pilN) [Acinetobacter baumannii strain LRB]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=812012 P9J61_RS16640 WP_000201223.1 3385838..3386479(-) (pilN) [Acinetobacter baumannii strain LRB]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTTATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704