Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCUAC_RS01490 Genome accession   NZ_AP023077
Coordinates   316326..316967 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311326..321967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS01470 - 311374..311706 (+) 333 WP_072688993.1 hypothetical protein -
  OCUAC_RS01475 - 311709..312533 (+) 825 WP_114225827.1 putative RNA methyltransferase -
  OCUAC_RS01480 ponA 312551..315106 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  OCUAC_RS01485 pilM 315268..316326 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OCUAC_RS01490 pilN 316326..316967 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  OCUAC_RS01495 pilO 316964..317704 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCUAC_RS01500 pilP 317715..318242 (+) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  OCUAC_RS01505 pilQ 318305..320470 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  OCUAC_RS01510 aroK 320482..321051 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=81158 OCUAC_RS01490 WP_000201226.1 316326..316967(+) (pilN) [Acinetobacter baumannii strain OCU_Ac16a]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=81158 OCUAC_RS01490 WP_000201226.1 316326..316967(+) (pilN) [Acinetobacter baumannii strain OCU_Ac16a]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709

Multiple sequence alignment