Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P7Y79_RS07635 Genome accession   NZ_CP121207
Coordinates   1577240..1578172 (-) Length   310 a.a.
NCBI ID   WP_074565179.1    Uniprot ID   A0AAE8HM92
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572240..1583172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS07635 (P7Y79_07635) amiF 1577240..1578172 (-) 933 WP_074565179.1 ATP-binding cassette domain-containing protein Regulator
  P7Y79_RS07640 (P7Y79_07640) - 1578172..1579218 (-) 1047 Protein_1498 ABC transporter ATP-binding protein -
  P7Y79_RS07645 (P7Y79_07645) - 1579230..1580261 (-) 1032 WP_074565183.1 ABC transporter permease -
  P7Y79_RS07650 (P7Y79_07650) - 1580273..1581187 (-) 915 WP_074603770.1 ABC transporter permease -
  P7Y79_RS07655 (P7Y79_07655) - 1581299..1582954 (-) 1656 WP_278007381.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35068.84 Da        Isoelectric Point: 5.4755

>NTDB_id=811118 P7Y79_RS07635 WP_074565179.1 1577240..1578172(-) (amiF) [Streptococcus ruminicola strain CNU_77-47]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIDFNGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQVYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKKALS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=811118 P7Y79_RS07635 WP_074565179.1 1577240..1578172(-) (amiF) [Streptococcus ruminicola strain CNU_77-47]
ATGACTGAAAATAGAAAAAAGCTGGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCCATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTTTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTAAAACTTTACGATATTAGTGATGGTGAAATCGACTTTAATGGAGAAACAGTTTCTAACCTT
AAAGGTAAAGAACTACATGAATTCCGTAAAAATGTGCAAATGATTTTCCAAGACCCACAAGCAAGTCTTAATGGACGTAT
GAAAATCCGTGATATCGTTGCTGAGGGTCTTGATATTCACAAACTCGTTAATAGTAAAGAAGAACGTGACGAAAAAGTTC
AAGAATTACTTTCACTAGTAGGATTGAACAAAGATCACATGACTCGTTACCCACACGAATTCTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAACTTGATGCAAAAACTTCAACGCGAAAAAGGCTTGACTTACCTCTTCATCGCTCACGATT
TGTCAATGGTCAAATACATTTCAGATCGTATTGGTGTAATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAATAACCCAATTCACCCATACACTAAGAGTTTATTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGCGTGCATCAAGTTTATGATCCAAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATTACACCAGGTCACT
TTGTACTTTCTACTGAAGCTGAAGCTGAAGAATATAAAAAAGCATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.536

98.71

0.558
  amiF Streptococcus thermophilus LMG 18311

56.209

98.71

0.555
  amiF Streptococcus salivarius strain HSISS4

55.7

99.032

0.552