Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   P7F70_RS06385 Genome accession   NZ_CP121201
Coordinates   1267948..1268829 (-) Length   293 a.a.
NCBI ID   WP_256866620.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1262948..1273829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS06370 (P7F70_06370) pheT 1263337..1265742 (-) 2406 WP_278023718.1 phenylalanine--tRNA ligase subunit beta -
  P7F70_RS06375 (P7F70_06375) - 1265934..1266461 (-) 528 WP_115130477.1 N-acetyltransferase -
  P7F70_RS06380 (P7F70_06380) pheS 1266473..1267516 (-) 1044 WP_218653415.1 phenylalanine--tRNA ligase subunit alpha -
  P7F70_RS06385 (P7F70_06385) endA 1267948..1268829 (-) 882 WP_256866620.1 DNA/RNA non-specific endonuclease Machinery gene
  P7F70_RS06390 (P7F70_06390) - 1268863..1269051 (-) 189 WP_104968117.1 DNA-directed RNA polymerase subunit beta -
  P7F70_RS06395 (P7F70_06395) murA 1269053..1270321 (-) 1269 WP_218653416.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  P7F70_RS06400 (P7F70_06405) - 1270897..1271313 (-) 417 WP_104968120.1 F0F1 ATP synthase subunit epsilon -
  P7F70_RS06405 (P7F70_06410) atpD 1271326..1272732 (-) 1407 WP_218653418.1 F0F1 ATP synthase subunit beta -
  P7F70_RS06410 (P7F70_06415) - 1272828..1273703 (-) 876 WP_218653419.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 31955.49 Da        Isoelectric Point: 9.0205

>NTDB_id=810997 P7F70_RS06385 WP_256866620.1 1267948..1268829(-) (endA) [Streptococcus pluranimalium strain SP28]
MVKPYDVKKSSKSKFSVLVVIITLILGLVAGTDQLSDDNPLKQLAQVVTNGSNQEKVNSNGSSANESTLNQDLAQSVLTS
SVRKSLGDDIKWNGAGAFVINNNKTNLDASVSSMPYVDNKIKRVQGKLVPSVANAMLSKQSRQYRNRELTGNGSTSWKPA
GWHQVHDLPGEYDHAIERGHLIGYAIAGNIDGFDPSASNPQNIAVQTAWSNQARDHDSTGQNYYETQIRRALDNNKRVRY
RVTLVYEGDNIIASGSHLEAKSSDGSLEFNVFVPNVQPGITLNYANGQVTVNH

Nucleotide


Download         Length: 882 bp        

>NTDB_id=810997 P7F70_RS06385 WP_256866620.1 1267948..1268829(-) (endA) [Streptococcus pluranimalium strain SP28]
ATGGTTAAACCTTATGATGTAAAAAAATCATCTAAATCGAAGTTTTCTGTTCTAGTAGTCATTATAACCTTAATCTTAGG
TCTTGTTGCAGGGACAGATCAGCTGTCAGATGATAACCCTCTGAAACAGCTAGCTCAAGTTGTGACGAATGGTTCAAATC
AGGAAAAAGTAAATTCTAACGGCTCAAGTGCAAATGAATCGACACTAAACCAAGACTTAGCGCAATCCGTTTTGACCTCA
TCTGTTAGAAAATCTTTAGGAGATGATATCAAATGGAATGGTGCAGGTGCCTTTGTGATTAATAACAACAAAACAAATCT
TGATGCCAGTGTGTCCAGCATGCCTTATGTGGATAATAAAATAAAGCGGGTCCAAGGAAAGCTTGTCCCGTCAGTAGCAA
ATGCTATGCTGTCTAAACAAAGTCGACAATATCGTAATCGTGAATTAACGGGGAATGGGTCAACGTCATGGAAGCCGGCA
GGCTGGCATCAGGTTCATGATTTACCAGGTGAATACGATCATGCTATTGAGCGAGGTCACTTAATTGGTTACGCCATTGC
GGGTAATATTGATGGCTTTGACCCTTCTGCAAGTAACCCTCAAAATATCGCTGTTCAGACAGCTTGGTCTAACCAAGCTA
GAGATCATGATTCAACGGGGCAAAACTATTATGAGACACAAATTCGTCGTGCTTTAGATAATAATAAACGTGTTCGTTAT
CGTGTGACTCTTGTTTATGAAGGCGATAATATCATTGCTTCTGGCTCGCATCTTGAAGCCAAATCAAGTGATGGTAGTTT
GGAATTTAATGTCTTTGTACCAAATGTTCAACCTGGCATTACGCTTAACTATGCTAATGGGCAGGTGACAGTTAATCACT
AA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.946

76.451

0.481
  endA Streptococcus pneumoniae D39

62.946

76.451

0.481
  endA Streptococcus pneumoniae R6

62.946

76.451

0.481
  endA Streptococcus pneumoniae TIGR4

62.946

76.451

0.481