Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P7F70_RS01520 Genome accession   NZ_CP121201
Coordinates   287356..288291 (+) Length   311 a.a.
NCBI ID   WP_278024934.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 282356..293291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS01500 (P7F70_01500) - 282563..284224 (+) 1662 WP_278024930.1 peptide ABC transporter substrate-binding protein -
  P7F70_RS01505 (P7F70_01505) - 284339..285253 (+) 915 WP_278024931.1 ABC transporter permease -
  P7F70_RS01510 (P7F70_01510) - 285264..286295 (+) 1032 WP_278024932.1 ABC transporter permease -
  P7F70_RS01515 (P7F70_01515) oppD 286310..287356 (+) 1047 WP_278024933.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS01520 (P7F70_01520) amiF 287356..288291 (+) 936 WP_278024934.1 ATP-binding cassette domain-containing protein Regulator
  P7F70_RS01525 (P7F70_01525) - 288670..289113 (-) 444 WP_278024790.1 transposase -
  P7F70_RS01530 (P7F70_01530) - 289076..289456 (-) 381 WP_278024791.1 hypothetical protein -
  P7F70_RS01535 (P7F70_01535) - 289460..289837 (-) 378 WP_278024792.1 transposase -
  P7F70_RS01540 (P7F70_01540) - 290032..291285 (-) 1254 WP_278024793.1 ISL3 family transposase -
  P7F70_RS01545 (P7F70_01545) - 291422..292365 (-) 944 Protein_264 IS30 family transposase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35210.09 Da        Isoelectric Point: 6.3745

>NTDB_id=810985 P7F70_RS01520 WP_278024934.1 287356..288291(+) (amiF) [Streptococcus pluranimalium strain SP28]
MENNKKKLVELKNVSLTFNEGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINDGEIIFNGEKVSHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKEERDEKVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPEKERARVHQVYDPTAELDGQERTMHEITPGHFVLATEEEAQLYKEQLQK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=810985 P7F70_RS01520 WP_278024934.1 287356..288291(+) (amiF) [Streptococcus pluranimalium strain SP28]
ATGGAAAATAACAAAAAAAAATTAGTTGAACTAAAAAATGTTTCTCTTACGTTTAACGAAGGGAAATCAAACGAAGTTAA
AGCCATTAATAATGTTAGCTTTGACATCTATGAAGGTGAAGTTTTTGGTTTAGTTGGTGAGTCTGGTTCAGGTAAAACAA
CCGTTGGCCGTGCTATTTTGAAACTGTATGATATTAACGACGGAGAAATTATCTTTAATGGTGAAAAAGTCTCACATTTA
AAAGGTAAAGCACAACATAATTTCCGTAAACAAGCTCAAATGATTTTTCAAGATCCACAAGCAAGTCTTAACGGGCGAAT
GAAAATCCGTGATATTGTTGCTGAAGGATTGGACATCCATAAGTTGGTTTCATCCAAGGAAGAACGGGATGAAAAAGTTC
AACACCTTCTTGATTTAGTTGGTTTAAATAAAGATCACTTAACACGTTATCCTCATGAGTTTTCTGGTGGACAACGTCAG
CGTATCGGTATTGCCCGTGCTCTTGCTGTTGAACCGAAATTTATCATTGCCGATGAACCAATTTCAGCGTTGGATGTTTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAATTACAACGTGAGCAAGGCTTGACATATCTCTTTATTGCCCACGATT
TATCAATGGTTAAATATATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGAACATCTGAAGAT
GTTTATAATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCAGCTATTCCAGAACCGGATCCTGAAAAAGAACGTGC
CCGTGTTCATCAAGTCTATGATCCAACAGCAGAATTGGATGGACAAGAACGCACTATGCATGAAATCACACCAGGTCATT
TTGTTCTTGCTACAGAAGAAGAAGCGCAGCTCTATAAAGAACAATTGCAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.035

0.54
  amiF Streptococcus thermophilus LMG 18311

54.221

99.035

0.537
  amiF Streptococcus salivarius strain HSISS4

54.221

99.035

0.537